Os04g0441700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0441700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 169.66 | 0.612 | 2.77 | -0.00821 | 0.283 | 0.384 | 0.3 | 0.622 | 0.129 | 9.13 | 20.61 | 40 | -- | -- |
| 171.57 | 0.615 | 2.76 | 0.106 | 0.284 | 0.349 | 0.174 | -- | 0.152 | 8.8 | 20.6 | 45 | -- | -- |
| 169.87 | 0.607 | 2.77 | 0.0123 | 0.281 | 0.386 | -- | 0.584 | 0.131 | 9.16 | 20.66 | 47 | -- | -- |
| 171.66 | 0.614 | 2.76 | 0.113 | 0.283 | 0.352 | -- | -- | 0.153 | 8.94 | 20.7 | 45 | -- | -- |
| 174.32 | 0.615 | 2.78 | 0.00358 | -- | 0.338 | -- | 0.564 | 0.124 | -- | 20.65 | 47 | -- | -- |
| 176.86 | 0.623 | 2.78 | 0.0185 | 0.254 | -- | 0.321 | -- | 0.0834 | 7.45 | -- | -- | -- | -- |
| 177.12 | 0.623 | 2.78 | 0.0268 | 0.254 | -- | -- | -- | 0.0833 | 7.75 | -- | -- | -- | -- |
| 176.04 | 0.618 | 2.77 | 0.111 | -- | 0.312 | -- | -- | 0.149 | -- | 20.62 | 47 | -- | -- |
| 171.99 | 0.614 | 2.76 | -- | 0.282 | 0.336 | -- | -- | 0.138 | 8.87 | 20.7 | 45 | -- | -- |
| 180.59 | 0.628 | 2.78 | 0.0299 | -- | -- | -- | -- | 0.0869 | -- | -- | -- | -- | -- |
| 177.14 | 0.623 | 2.78 | -- | 0.254 | -- | -- | -- | 0.0803 | 7.74 | -- | -- | -- | -- |
| 176.35 | 0.618 | 2.77 | -- | -- | 0.297 | -- | -- | 0.134 | -- | 20.6 | 47 | -- | -- |
| 180.62 | 0.627 | 2.78 | -- | -- | -- | -- | -- | 0.0836 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 157.17 | temperature | 20.0 | 10 | < th | dose independent | rect. | 6 | 10 |
| 5 | 157.18 | temperature | 20.0 | 10 | < th | dose independent | rect. | 6 | 8 |
| 7 | 157.19 | temperature | 20.0 | 10 | < th | dose independent | rect. | 6 | 6 |
| 9 | 157.25 | temperature | 20.0 | 10 | < th | dose independent | rect. | 6 | 2 |
| 10 | 157.29 | temperature | 20.0 | 10 | < th | dose independent | rect. | 6 | 4 |
| 42 | 158.57 | wind | 5.0 | 10 | > th | dose independent | rect. | 8 | 1 |
| 44 | 158.57 | wind | 5.0 | 10 | > th | dose dependent | rect. | 8 | 1 |
| 56 | 158.58 | temperature | 20.0 | 30 | < th | dose dependent | rect. | 7 | 1 |
| 96 | 158.86 | temperature | 20.0 | 10 | < th | dose independent | rect. | 3 | 6 |
| 174 | 161.05 | temperature | 20.0 | 30 | < th | dose independent | sin | 1 | NA |
| 178 | 161.42 | temperature | 20.0 | 30 | > th | dose independent | sin | 1 | NA |
| 236 | 162.66 | wind | 3.0 | 90 | > th | dose dependent | rect. | 6 | 1 |
| 237 | 162.76 | wind | 3.0 | 270 | > th | dose dependent | rect. | 23 | 9 |
| 250 | 163.46 | temperature | 20.0 | 30 | < th | dose independent | rect. | 24 | 9 |
| 258 | 163.63 | wind | 5.0 | 270 | > th | dose independent | rect. | 23 | 2 |
| 270 | 163.84 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 23 | 2 |
| 272 | 163.84 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 23 | 2 |
| 276 | 163.91 | wind | 5.0 | 270 | > th | dose independent | rect. | 23 | 8 |
| 290 | 164.14 | wind | 5.0 | 270 | > th | dose dependent | rect. | 23 | 2 |
| 305 | 164.31 | humidity | 80.0 | 90 | < th | dose dependent | rect. | 6 | 1 |
| 321 | 164.68 | temperature | 20.0 | 10 | > th | dose independent | rect. | 3 | 9 |
| 338 | 164.87 | temperature | 20.0 | 90 | < th | dose dependent | rect. | 2 | 1 |
| 339 | 164.88 | wind | 3.0 | 90 | > th | dose independent | rect. | 6 | 1 |
| 436 | 165.30 | temperature | 20.0 | 30 | < th | dose independent | rect. | 3 | 1 |
| 474 | 165.64 | humidity | 80.0 | 90 | < th | dose independent | rect. | 6 | 1 |
| 477 | 165.70 | wind | 3.0 | 10 | > th | dose dependent | rect. | 24 | 9 |
| 501 | 166.04 | temperature | 20.0 | 270 | < th | dose independent | rect. | 3 | 1 |
| 512 | 166.09 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 1 | 7 |
| 520 | 166.17 | temperature | 20.0 | 10 | > th | dose independent | rect. | 24 | 12 |
| 527 | 166.22 | radiation | 10.0 | 10 | < th | dose independent | rect. | 8 | 1 |
| 539 | 166.25 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 2 | 7 |
| 545 | 166.34 | wind | 7.0 | 720 | > th | dose independent | rect. | 20 | 1 |
| 546 | 166.34 | temperature | 20.0 | 10 | > th | dose independent | rect. | 3 | 12 |
| 599 | 166.68 | wind | 7.0 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 608 | 166.73 | wind | 5.0 | 10 | > th | dose independent | rect. | 24 | 9 |
| 612 | 166.77 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 23 | 6 |
| 620 | 166.86 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 24 | 9 |
| 654 | 167.10 | humidity | 80.0 | 270 | < th | dose independent | rect. | 3 | 4 |
| 668 | 167.18 | humidity | 80.0 | 270 | < th | dose dependent | rect. | 3 | 4 |
| 712 | 167.56 | temperature | 25.0 | 10 | < th | dose dependent | sin | 4 | NA |
| 731 | 167.67 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 9 | 3 |
| 779 | 167.90 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 1 | 15 |
| 811 | 168.03 | temperature | 20.0 | 270 | > th | dose independent | rect. | 20 | 13 |
| 833 | 168.14 | temperature | 20.0 | 10 | > th | dose independent | rect. | 22 | 14 |
| 890 | 168.31 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 24 | 17 |
| 913 | 168.40 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 2 | 15 |
| 922 | 168.42 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 21 | 1 |
| 924 | 168.42 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 936 | 168.46 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 21 | 1 |
| 974 | 168.55 | wind | 5.0 | 10 | > th | dose independent | rect. | 2 | 7 |