BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0423600 Os04g0423600|AK065331
         (641 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os04g0423600  Nuclear protein SET domain containing protein      1310   0.0  

>Os04g0423600 Nuclear protein SET domain containing protein
          Length = 641

 Score = 1310 bits (3391), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 632/641 (98%), Positives = 632/641 (98%)

Query: 1   MAMGMRARESVNMSEDLTQAIAPYATALHDASLQSHCSSCFHRIPAQSPHDMSCTMCGSV 60
           MAMGMRARESVNMSEDLTQAIAPYATALHDASLQSHCSSCFHRIPAQSPHDMSCTMCGSV
Sbjct: 1   MAMGMRARESVNMSEDLTQAIAPYATALHDASLQSHCSSCFHRIPAQSPHDMSCTMCGSV 60

Query: 61  RYCCSDCLISDCEVHSSSGECCFFVKHLREASPSTLTEETSDIRAALRLLYSLETRGLXX 120
           RYCCSDCLISDCEVHSSSGECCFFVKHLREASPSTLTEETSDIRAALRLLYSLETRGL  
Sbjct: 61  RYCCSDCLISDCEVHSSSGECCFFVKHLREASPSTLTEETSDIRAALRLLYSLETRGLVS 120

Query: 121 XXXXXXXNRIGGLSASGIREVLEEGGEIAEGVLEGSLLMLSARKSRMKNYVGLSNGLTIE 180
                  NRIGGLSASGIREVLEEGGEIAEGVLEGSLLMLSARKSRMKNYVGLSNGLTIE
Sbjct: 121 SDSVSSSNRIGGLSASGIREVLEEGGEIAEGVLEGSLLMLSARKSRMKNYVGLSNGLTIE 180

Query: 181 KVALWAVMTNSVEVQISEEQSLGIAVYGPSFSWFNHSCCPSASYRFVLVPQNEGCTSNKP 240
           KVALWAVMTNSVEVQISEEQSLGIAVYGPSFSWFNHSCCPSASYRFVLVPQNEGCTSNKP
Sbjct: 181 KVALWAVMTNSVEVQISEEQSLGIAVYGPSFSWFNHSCCPSASYRFVLVPQNEGCTSNKP 240

Query: 241 ESCVVPVSKGAAPDAWHAWQNEEAGFAHAQCKYGPRVVVRCTKPINKGDEVFITYIDLLQ 300
           ESCVVPVSKGAAPDAWHAWQNEEAGFAHAQCKYGPRVVVRCTKPINKGDEVFITYIDLLQ
Sbjct: 241 ESCVVPVSKGAAPDAWHAWQNEEAGFAHAQCKYGPRVVVRCTKPINKGDEVFITYIDLLQ 300

Query: 301 TREARLSDLWSKYKFICSCELCTALPKPYVDLILNCDARNLKSPHNAVTDPAIEDLDNNL 360
           TREARLSDLWSKYKFICSCELCTALPKPYVDLILNCDARNLKSPHNAVTDPAIEDLDNNL
Sbjct: 301 TREARLSDLWSKYKFICSCELCTALPKPYVDLILNCDARNLKSPHNAVTDPAIEDLDNNL 360

Query: 361 QQAISEYSFLDDSKACCDVIESMLSENLMNDLQQEELSPRKYILHPLHHISVSSFMILAS 420
           QQAISEYSFLDDSKACCDVIESMLSENLMNDLQQEELSPRKYILHPLHHISVSSFMILAS
Sbjct: 361 QQAISEYSFLDDSKACCDVIESMLSENLMNDLQQEELSPRKYILHPLHHISVSSFMILAS 420

Query: 421 AYRCSAFKSSTDNLHGENCDFIFRMTKAAAAYSIVLAGATHHLFLSECSFVTLLSHFLLS 480
           AYRCSAFKSSTDNLHGENCDFIFRMTKAAAAYSIVLAGATHHLFLSECSFVTLLSHFLLS
Sbjct: 421 AYRCSAFKSSTDNLHGENCDFIFRMTKAAAAYSIVLAGATHHLFLSECSFVTLLSHFLLS 480

Query: 481 TGQSILDFAECIKGETRKNMPEAIFSFASCSTNSAKHDSVRYNQFRSTCEKFGKPLLSLS 540
           TGQSILDFAECIKGETRKNMPEAIFSFASCSTNSAKHDSVRYNQFRSTCEKFGKPLLSLS
Sbjct: 481 TGQSILDFAECIKGETRKNMPEAIFSFASCSTNSAKHDSVRYNQFRSTCEKFGKPLLSLS 540

Query: 541 LQCWPFLAQGLPCLEKIKNPIDFSWLGPAIFQAFQLSEEDSFNLSGKHAPATLIEQQKEC 600
           LQCWPFLAQGLPCLEKIKNPIDFSWLGPAIFQAFQLSEEDSFNLSGKHAPATLIEQQKEC
Sbjct: 541 LQCWPFLAQGLPCLEKIKNPIDFSWLGPAIFQAFQLSEEDSFNLSGKHAPATLIEQQKEC 600

Query: 601 ILSLAVCCITYSKYLASICYGPEHYLANRAKDLLECINHVQ 641
           ILSLAVCCITYSKYLASICYGPEHYLANRAKDLLECINHVQ
Sbjct: 601 ILSLAVCCITYSKYLASICYGPEHYLANRAKDLLECINHVQ 641



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.321    0.132    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 21,185,888
Number of extensions: 859553
Number of successful extensions: 1913
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1913
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 534
Effective length of database: 11,448,903
Effective search space: 6113714202
Effective search space used: 6113714202
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 159 (65.9 bits)