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Os04g0423600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Nuclear protein SET domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.2 (0.0366) R2 : 0.816
β1 : -2.55 (0.134) R2dD : 0.152 R2D : 0.148
β2 : 3.57 (0.0879) R2dC : 0.666 R2C : 0.668
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.257 (0.078) R2dN8 : 0.00588 R2N8 : -0.0085
σ : 0.687
deviance : 215.29
__
_____
C
peak time of C : 10.4
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
182.05 0.634 12.2 -2.66 5.05 1.71 4.81 4.35 -0.237 11.7 0.3898 275 -- --
203.59 0.665 12.2 -2.53 4.94 1.62 0.848 -- -0.219 11.6 0.4226 280 -- --
193.21 0.647 12.2 -2.61 3.25 1.43 -- 2.91 -0.256 11.6 1.312 780 -- --
204.03 0.665 12.2 -2.42 4.79 1.5 -- -- -0.21 11.6 0.42 285 -- --
378.95 0.912 12.3 -2.65 -- -2.34 -- -0.0746 -0.311 -- 0.9729 1124 -- --
212.07 0.683 12.2 -2.59 3.57 -- 0.895 -- -0.26 10.4 -- -- -- --
215.29 0.687 12.2 -2.55 3.57 -- -- -- -0.257 10.4 -- -- -- --
378.99 0.911 12.3 -2.65 -- -2.34 -- -- -0.312 -- 0.9729 1124 -- --
360.43 0.884 12.1 -- 4.58 1.34 -- -- -0.0459 11.5 0.01924 287 -- --
992.81 1.47 12.3 -2.61 -- -- -- -- -0.27 -- -- -- -- --
387.07 0.92 12.1 -- 3.58 -- -- -- 0.0269 10.5 -- -- -- --
564.08 1.11 12.2 -- -- -2.33 -- -- -0.0177 -- 0.9729 1124 -- --
1172.82 1.6 12.2 -- -- -- -- -- 0.0197 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 170.27 radiation 1.0 720 > th dose independent rect. 7 3
2 171.45 radiation 20.0 720 < th dose dependent rect. 19 12
5 171.89 radiation 10.0 720 < th dose independent rect. 19 12
7 174.17 precipitation 0.1 720 < th dose independent rect. 7 12
8 174.17 precipitation 0.1 720 < th dose dependent rect. 7 12
10 174.43 atmosphere 1015.0 720 < th dose independent rect. 2 5
12 174.56 temperature 15.0 720 > th dose independent rect. 2 5
13 174.65 wind 7.0 720 < th dose independent rect. 7 3
14 174.69 radiation 1.0 720 > th dose independent rect. 17 17
15 174.74 radiation 40.0 720 < th dose independent rect. 15 4
16 175.10 temperature 15.0 720 > th dose independent rect. 10 21
17 175.59 precipitation 0.1 720 < th dose independent rect. 19 3
18 175.59 precipitation 0.1 720 < th dose dependent rect. 19 3
19 175.61 humidity 80.0 720 < th dose independent rect. 8 2
20 175.68 wind 7.0 720 < th dose independent rect. 19 3
24 175.89 precipitation 0.1 720 < th dose independent rect. 15 4
25 175.89 precipitation 0.1 720 < th dose dependent rect. 15 4
26 175.90 wind 9.0 720 < th dose independent rect. 19 12
28 175.98 radiation 40.0 720 < th dose dependent rect. 3 4
29 176.00 precipitation 0.1 720 < th dose independent rect. 7 3
30 176.00 precipitation 0.1 720 < th dose dependent rect. 7 3
32 176.11 precipitation 0.1 720 < th dose independent rect. 22 21
33 176.11 precipitation 0.1 720 < th dose dependent rect. 22 21
41 176.31 temperature 10.0 720 > th dose independent rect. 7 12
42 176.31 temperature 10.0 720 > th dose independent rect. 19 12
43 176.31 temperature 30.0 720 < th dose independent rect. 19 12
44 176.31 humidity 50.0 720 > th dose independent rect. 19 12
45 176.31 atmosphere 995.0 720 > th dose independent rect. 19 12
46 176.31 atmosphere 1015.0 720 < th dose independent rect. 7 12
49 176.34 temperature 15.0 720 > th dose independent rect. 22 21
52 176.46 wind 1.0 720 > th dose independent rect. 13 6
59 176.88 temperature 10.0 720 > th dose independent rect. 7 3
60 176.88 atmosphere 995.0 720 > th dose independent rect. 7 3
61 176.88 atmosphere 1015.0 720 < th dose independent rect. 7 3
63 176.89 radiation 10.0 10 < th dose independent rect. 21 11
65 177.10 radiation 1.0 720 < th dose dependent rect. 19 3
66 177.12 temperature 10.0 720 > th dose independent rect. 19 3
67 177.12 temperature 30.0 720 < th dose independent rect. 19 3
68 177.12 humidity 50.0 720 > th dose independent rect. 19 3
69 177.12 atmosphere 995.0 720 > th dose independent rect. 19 3
70 177.12 radiation 1.0 720 < th dose independent rect. 19 3
82 177.32 atmosphere 1000.0 720 > th dose independent rect. 15 4
84 177.35 humidity 50.0 270 > th dose independent rect. 10 13
85 177.37 radiation 10.0 720 < th dose independent rect. 2 5
87 177.42 humidity 70.0 90 > th dose independent rect. 19 12
93 177.64 humidity 50.0 720 > th dose independent rect. 7 3
95 177.67 wind 9.0 720 < th dose independent rect. 19 10
98 177.71 wind 9.0 720 < th dose independent rect. 22 21
102 177.78 wind 9.0 270 < th dose independent rect. 6 13
103 177.78 radiation 30.0 270 < th dose dependent sin 12 NA
105 177.84 humidity 90.0 720 < th dose dependent rect. 9 1
109 177.90 humidity 70.0 720 > th dose independent rect. 3 4
110 177.91 temperature 10.0 720 > th dose dependent rect. 7 3
131 178.19 temperature 10.0 720 > th dose independent rect. 19 10
132 178.19 temperature 30.0 720 < th dose independent rect. 19 10
133 178.19 humidity 50.0 720 > th dose independent rect. 19 10
134 178.19 atmosphere 995.0 720 > th dose independent rect. 19 10
138 178.19 temperature 10.0 720 > th dose independent rect. 5 14
139 178.19 atmosphere 1015.0 720 < th dose independent rect. 5 14
144 178.28 radiation 30.0 720 < th dose independent rect. 17 14
146 178.28 humidity 90.0 720 < th dose dependent rect. 7 3
158 178.34 temperature 10.0 720 > th dose independent rect. 7 10
159 178.34 atmosphere 1015.0 720 < th dose independent rect. 7 10
160 178.34 temperature 10.0 720 > th dose independent rect. 17 14
168 178.46 humidity 50.0 720 > th dose independent rect. 17 14
173 178.58 radiation 30.0 720 < th dose independent rect. 3 4
174 178.61 temperature 15.0 720 > th dose independent rect. 19 19
175 178.67 wind 9.0 720 < th dose independent rect. 3 4
177 178.67 temperature 30.0 720 < th dose independent rect. 3 4
178 178.67 humidity 50.0 720 > th dose independent rect. 3 4
180 178.67 atmosphere 995.0 720 > th dose independent rect. 3 4
182 178.67 temperature 10.0 720 > th dose independent rect. 7 20
183 178.71 temperature 10.0 720 > th dose independent rect. 15 4
184 178.71 atmosphere 1015.0 720 < th dose independent rect. 15 4
188 178.82 wind 9.0 720 < th dose independent rect. 17 14
206 178.99 atmosphere 995.0 720 > th dose independent rect. 19 19
215 179.14 temperature 30.0 720 < th dose independent rect. 19 20
216 179.19 radiation 10.0 270 < th dose independent sin 12 NA
222 179.27 radiation 40.0 720 < th dose dependent rect. 17 14
223 179.29 precipitation 0.1 720 < th dose independent rect. 19 12
224 179.29 precipitation 0.1 720 < th dose dependent rect. 19 12
227 179.36 atmosphere 1015.0 270 < th dose independent rect. 23 11
228 179.37 wind 9.0 720 < th dose independent rect. 14 5
235 179.62 temperature 10.0 270 > th dose independent rect. 23 11
236 179.62 atmosphere 995.0 270 > th dose independent rect. 23 11
237 179.62 temperature 10.0 270 > th dose independent rect. 10 13
242 179.73 wind 9.0 720 < th dose independent rect. 19 19
258 179.85 temperature 10.0 270 > th dose dependent rect. 15 11
260 179.87 temperature 15.0 270 > th dose independent rect. 2 12
263 179.91 humidity 50.0 270 > th dose independent rect. 23 11
265 179.94 wind 9.0 270 < th dose independent rect. 23 11
267 180.13 wind 9.0 720 < th dose independent rect. 10 21
269 180.17 atmosphere 1015.0 720 < th dose independent rect. 1 15
271 180.19 humidity 90.0 14400 > th dose dependent rect. 9 2
273 180.21 radiation 1.0 270 < th dose independent rect. 17 15
274 180.23 precipitation 0.1 270 < th dose independent rect. 23 11
275 180.23 precipitation 0.1 270 < th dose dependent rect. 23 11
285 180.28 radiation 1.0 270 < th dose independent rect. 17 18
288 180.29 radiation 30.0 720 < th dose independent rect. 16 9
299 180.39 precipitation 0.1 720 < th dose independent rect. 19 20
300 180.39 precipitation 0.1 720 < th dose dependent rect. 19 20
304 180.46 humidity 50.0 720 > th dose dependent rect. 22 5
312 180.58 radiation 30.0 10 < th dose dependent rect. 21 12
319 180.61 temperature 30.0 720 < th dose independent rect. 11 4
321 180.63 temperature 10.0 720 > th dose independent rect. 10 5
322 180.63 atmosphere 1015.0 720 < th dose independent rect. 10 5
323 180.63 temperature 10.0 720 > th dose independent rect. 15 19
326 180.66 radiation 30.0 43200 < th dose independent rect. 11 1
328 180.69 temperature 30.0 720 < th dose independent rect. 13 1
334 180.83 precipitation 0.1 720 < th dose independent rect. 10 5
335 180.83 radiation 1.0 720 < th dose independent rect. 4 18
337 180.83 precipitation 0.1 720 < th dose dependent rect. 10 5
338 180.84 radiation 30.0 43200 > th dose independent rect. 10 2
341 180.89 temperature 10.0 720 > th dose independent rect. 22 5
342 180.89 temperature 30.0 720 < th dose independent rect. 22 5
343 180.89 humidity 50.0 720 > th dose independent rect. 22 5
346 180.89 atmosphere 995.0 720 > th dose independent rect. 22 5
347 180.89 radiation 1.0 720 < th dose independent rect. 22 5
352 180.89 temperature 10.0 720 > th dose independent rect. 3 19
353 180.89 radiation 1.0 720 < th dose dependent rect. 22 5
358 180.90 radiation 1.0 720 < th dose dependent rect. 4 18
363 181.02 wind 9.0 720 < th dose independent rect. 22 5
373 181.10 radiation 1.0 270 < th dose dependent rect. 17 15
376 181.12 radiation 1.0 270 < th dose dependent rect. 17 18
378 181.13 precipitation 0.1 720 < th dose independent rect. 3 4
380 181.13 precipitation 0.1 720 < th dose dependent rect. 3 4
385 181.17 wind 1.0 14400 > th dose independent rect. 8 2
392 181.19 temperature 15.0 1440 > th dose independent rect. 8 14
397 181.24 temperature 20.0 270 > th dose independent rect. 14 11
406 181.31 precipitation 0.1 720 < th dose independent rect. 7 20
407 181.31 precipitation 0.1 720 < th dose dependent rect. 7 20
409 181.37 wind 9.0 720 < th dose independent rect. 7 10
417 181.40 radiation 1.0 270 > th dose independent rect. 13 22
423 181.46 humidity 50.0 720 > th dose independent rect. 19 19
427 181.49 radiation 1.0 270 < th dose dependent rect. 17 12
431 181.55 radiation 1.0 270 > th dose dependent rect. 15 18
440 181.59 wind 1.0 14400 < th dose independent rect. 8 2
477 181.77 wind 9.0 14400 > th dose independent rect. 20 16
494 181.80 temperature 10.0 30 > th dose dependent rect. 7 14
502 181.85 radiation 30.0 90 < th dose dependent rect. 21 12
507 181.88 precipitation 0.1 270 < th dose independent rect. 10 13
508 181.88 precipitation 0.1 270 < th dose dependent rect. 10 13
511 181.90 humidity 70.0 30 > th dose independent sin 10 NA
514 181.92 wind 1.0 14400 < th dose dependent rect. 18 3
529 182.01 temperature 20.0 10 > th dose independent rect. 7 14
535 182.07 radiation 10.0 270 < th dose dependent rect. 19 16
563 182.21 wind 9.0 270 < th dose independent rect. 10 13
567 182.23 radiation 1.0 720 < th dose independent sin 3 NA
569 182.24 wind 9.0 720 < th dose independent rect. 7 19
571 182.27 wind 9.0 14400 < th dose independent rect. 19 17
572 182.28 wind 9.0 14400 > th dose dependent rect. 20 17
576 182.30 radiation 1.0 720 > th dose independent rect. 10 5
584 182.34 radiation 1.0 270 < th dose independent rect. 19 17
586 182.34 wind 9.0 720 < th dose dependent rect. 7 2
596 182.39 radiation 20.0 43200 > th dose dependent rect. 10 1
604 182.45 humidity 90.0 14400 > th dose independent rect. 9 5
621 182.47 radiation 1.0 270 < th dose dependent rect. 6 23
622 182.49 humidity 90.0 14400 > th dose independent rect. 9 2
635 182.51 radiation 1.0 270 < th dose independent rect. 19 23
637 182.52 radiation 1.0 720 < th dose dependent rect. 6 16
638 182.53 precipitation 0.1 720 < th dose independent rect. 22 6
639 182.53 precipitation 0.1 720 < th dose dependent rect. 22 6
666 182.66 atmosphere 1000.0 720 > th dose independent rect. 16 1
683 182.69 radiation 10.0 270 > th dose dependent rect. 16 16
684 182.70 temperature 20.0 10 > th dose independent rect. 16 12
688 182.71 wind 9.0 720 < th dose independent rect. 10 5
694 182.74 wind 9.0 720 < th dose independent rect. 15 19
695 182.75 wind 1.0 720 > th dose independent rect. 7 12
720 182.84 humidity 50.0 270 > th dose independent rect. 3 12
735 182.90 humidity 90.0 270 < th dose independent rect. 10 5
748 182.98 radiation 40.0 43200 < th dose dependent rect. 10 1
749 182.98 radiation 1.0 720 > th dose dependent rect. 7 2
761 183.02 radiation 1.0 270 < th dose dependent rect. 19 23
777 183.08 temperature 10.0 720 > th dose independent rect. 16 9
781 183.08 temperature 10.0 720 > th dose independent rect. 1 15
792 183.12 radiation 1.0 270 < th dose dependent no NA NA
798 183.14 atmosphere 1015.0 720 < th dose independent rect. 22 21
802 183.18 radiation 1.0 720 > th dose independent sin 11 NA
811 183.22 atmosphere 1015.0 720 < th dose independent rect. 3 10
828 183.29 temperature 15.0 720 > th dose independent rect. 1 9
829 183.30 radiation 40.0 720 < th dose independent rect. 7 2
832 183.33 atmosphere 995.0 720 > th dose independent rect. 10 5
849 183.41 radiation 1.0 270 < th dose dependent rect. 9 23
850 183.42 humidity 70.0 720 > th dose independent rect. 3 8
857 183.44 temperature 10.0 720 > th dose independent rect. 4 9
858 183.44 atmosphere 995.0 720 > th dose independent rect. 4 9
860 183.44 temperature 10.0 720 > th dose independent rect. 13 15
867 183.46 wind 9.0 270 < th dose independent rect. 15 12
871 183.47 precipitation 0.1 4320 > th dose dependent rect. 24 18
891 183.57 radiation 1.0 720 < th dose independent rect. 2 10
894 183.57 wind 9.0 720 < th dose dependent rect. 19 3
922 183.69 precipitation 0.1 720 < th dose independent rect. 15 19
924 183.69 precipitation 0.1 720 < th dose dependent rect. 15 19
928 183.71 temperature 15.0 720 > th dose independent rect. 22 15
964 183.83 radiation 1.0 720 < th dose independent rect. 2 13
970 183.85 wind 1.0 14400 < th dose dependent rect. 8 2
978 183.90 atmosphere 1000.0 270 > th dose independent rect. 15 12