BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0414700 Os04g0414700|AK058848
         (142 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK059990                                                          286   2e-78
Os04g0414700  Conserved hypothetical protein                      285   9e-78

>AK059990 
          Length = 175

 Score =  286 bits (733), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 142/142 (100%), Positives = 142/142 (100%)

Query: 1   MAASTVSGLAGATLARRPAFSTGFTTGARVSARNPLLTRNLERNGRITCMTFPQDWLRRD 60
           MAASTVSGLAGATLARRPAFSTGFTTGARVSARNPLLTRNLERNGRITCMTFPQDWLRRD
Sbjct: 34  MAASTVSGLAGATLARRPAFSTGFTTGARVSARNPLLTRNLERNGRITCMTFPQDWLRRD 93

Query: 61  LNVIGFGLIGWIAPSSVPAINGNSLTGLFFSSIGQELSHFPSPPALDSPFWLWLVTWHLG 120
           LNVIGFGLIGWIAPSSVPAINGNSLTGLFFSSIGQELSHFPSPPALDSPFWLWLVTWHLG
Sbjct: 94  LNVIGFGLIGWIAPSSVPAINGNSLTGLFFSSIGQELSHFPSPPALDSPFWLWLVTWHLG 153

Query: 121 LFLALTFGQIGFKGRTEGYFDK 142
           LFLALTFGQIGFKGRTEGYFDK
Sbjct: 154 LFLALTFGQIGFKGRTEGYFDK 175



>Os04g0414700 Conserved hypothetical protein
          Length = 142

 Score =  285 bits (728), Expect = 9e-78,   Method: Compositional matrix adjust.
 Identities = 142/142 (100%), Positives = 142/142 (100%)

Query: 1   MAASTVSGLAGATLARRPAFSTGFTTGARVSARNPLLTRNLERNGRITCMTFPQDWLRRD 60
           MAASTVSGLAGATLARRPAFSTGFTTGARVSARNPLLTRNLERNGRITCMTFPQDWLRRD
Sbjct: 1   MAASTVSGLAGATLARRPAFSTGFTTGARVSARNPLLTRNLERNGRITCMTFPQDWLRRD 60

Query: 61  LNVIGFGLIGWIAPSSVPAINGNSLTGLFFSSIGQELSHFPSPPALDSPFWLWLVTWHLG 120
           LNVIGFGLIGWIAPSSVPAINGNSLTGLFFSSIGQELSHFPSPPALDSPFWLWLVTWHLG
Sbjct: 61  LNVIGFGLIGWIAPSSVPAINGNSLTGLFFSSIGQELSHFPSPPALDSPFWLWLVTWHLG 120

Query: 121 LFLALTFGQIGFKGRTEGYFDK 142
           LFLALTFGQIGFKGRTEGYFDK
Sbjct: 121 LFLALTFGQIGFKGRTEGYFDK 142



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.324    0.140    0.454 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,254,568
Number of extensions: 217720
Number of successful extensions: 586
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 586
Number of HSP's successfully gapped: 2
Length of query: 142
Length of database: 17,035,801
Length adjustment: 91
Effective length of query: 51
Effective length of database: 12,284,327
Effective search space: 626500677
Effective search space used: 626500677
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 151 (62.8 bits)