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Os04g0414700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 16.9 (0.0326) R2 : 0.589
β1 : -1.57 (0.12) R2dD : 0.162 R2D : 0.11
β2 : -- (--) R2dC : -- R2C : --
β3 : -1.5 (0.0676) R2dE : 0.447 R2E : 0.426
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.279 (0.0698) R2dN8 : 0.0194 R2N8 : 0.00808
σ : 0.61
deviance : 171.56
__
_____
C
peak time of C : --
E
wheather : atmosphere
threshold : 1002
memory length : 14
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 20
open length of G : 7.13

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
143.05 0.562 16.9 -1.55 0.428 -1.4 1.09 -1.57 -0.287 7.42 1000 11 20 7
148.15 0.567 16.9 -1.61 0.436 -1.32 2.34 -- -0.283 9.04 1002 15 20.1 6.92
145.06 0.561 16.9 -1.53 0.412 -1.48 -- -1.91 -0.28 6.2 1001 11 20 7.05
162.69 0.594 16.9 -1.58 0.42 -1.49 -- -- -0.283 5.83 1002 13 20 7.18
152.75 0.576 16.9 -1.51 -- -1.53 -- -1.91 -0.291 -- 1000 13 19.9 7.04
226.86 0.706 16.9 -1.52 1.38 -- 1.95 -- -0.377 10.4 -- -- -- --
242.39 0.729 16.9 -1.44 1.37 -- -- -- -0.372 10.5 -- -- -- --
171.56 0.61 16.9 -1.57 -- -1.5 -- -- -0.279 -- 1002 14 20 7.13
230.45 0.707 16.9 -- 0.472 -1.5 -- -- -0.229 6.3 1002 13 20 7.07
356.79 0.883 17 -1.47 -- -- -- -- -0.377 -- -- -- -- --
297.19 0.806 16.9 -- 1.38 -- -- -- -0.211 10.5 -- -- -- --
236.55 0.716 16.9 -- -- -1.44 -- -- -0.177 -- 1002 14 19.9 7.05
413.44 0.949 16.9 -- -- -- -- -- -0.215 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 143.44 atmosphere 1000.0 10 > th dose independent rect. 20 7
4 150.63 temperature 10.0 30 > th dose dependent rect. 20 7
10 153.88 temperature 10.0 30 > th dose dependent rect. 3 17
12 154.27 temperature 15.0 10 > th dose independent rect. 20 7
16 154.68 wind 9.0 10 < th dose independent rect. 20 7
18 154.73 temperature 30.0 10 < th dose independent rect. 20 7
19 154.73 humidity 50.0 10 > th dose independent rect. 20 7
23 154.73 radiation 1.0 10 < th dose independent rect. 20 7
28 154.73 temperature 10.0 10 > th dose independent rect. 3 17
30 154.73 atmosphere 1015.0 10 < th dose independent rect. 3 17
31 154.73 radiation 1.0 10 < th dose dependent rect. 20 7
57 155.08 wind 9.0 10 < th dose independent rect. 3 17
61 156.45 precipitation 0.1 10 < th dose independent rect. 20 7
62 156.45 precipitation 0.1 10 < th dose dependent rect. 20 7
65 156.59 precipitation 0.1 30 < th dose independent rect. 3 17
66 156.59 precipitation 0.1 30 < th dose dependent rect. 3 17
69 157.17 humidity 50.0 10 > th dose dependent rect. 20 7
77 158.53 atmosphere 995.0 30 > th dose dependent rect. 20 7
97 158.61 humidity 50.0 10 > th dose independent rect. 3 17
100 158.86 radiation 30.0 14400 < th dose dependent rect. 21 7
143 160.91 wind 9.0 10 < th dose dependent rect. 20 7
146 161.27 atmosphere 1010.0 30 < th dose independent rect. 20 7
148 161.36 atmosphere 995.0 10 > th dose independent rect. 3 17
161 162.07 temperature 10.0 1440 > th dose independent rect. 21 7
164 162.07 temperature 30.0 1440 < th dose independent rect. 21 7
168 162.07 humidity 50.0 1440 > th dose independent rect. 21 7
174 162.07 atmosphere 995.0 1440 > th dose independent rect. 21 7
175 162.07 radiation 1.0 1440 < th dose independent rect. 21 7
195 162.07 temperature 10.0 1440 > th dose independent rect. 4 17
252 164.68 precipitation 0.1 270 < th dose independent rect. 5 9
253 164.68 precipitation 0.1 270 < th dose dependent rect. 5 9
275 164.74 temperature 10.0 270 > th dose dependent rect. 3 1
318 164.98 temperature 10.0 270 > th dose independent rect. 5 9
319 164.98 atmosphere 995.0 270 > th dose independent rect. 5 9
320 164.98 atmosphere 1015.0 270 < th dose independent rect. 5 9
321 164.98 temperature 10.0 270 > th dose independent rect. 14 15
327 165.15 wind 9.0 270 < th dose independent rect. 5 9
355 165.67 wind 1.0 30 > th dose independent rect. 20 7
357 165.68 wind 9.0 270 < th dose independent rect. 14 15
367 165.98 temperature 10.0 270 > th dose dependent rect. 2 3
382 166.30 radiation 40.0 10 < th dose dependent rect. 3 6
413 166.60 radiation 20.0 30 < th dose dependent rect. 3 17
420 166.65 atmosphere 1010.0 270 < th dose independent rect. 11 8
442 167.06 temperature 10.0 270 > th dose dependent rect. 1 5
450 167.33 radiation 30.0 90 < th dose dependent rect. 3 6
469 167.63 radiation 10.0 30 < th dose independent rect. 3 17
471 167.67 radiation 40.0 270 < th dose independent rect. 14 15
473 167.75 wind 7.0 270 < th dose independent rect. 3 1
477 167.76 temperature 10.0 270 > th dose independent rect. 3 1
479 167.76 temperature 30.0 270 < th dose independent rect. 3 1
480 167.76 humidity 50.0 270 > th dose independent rect. 3 1
483 167.76 atmosphere 995.0 270 > th dose independent rect. 3 1
484 167.76 atmosphere 1010.0 270 < th dose independent rect. 3 1
486 167.76 radiation 1.0 270 < th dose independent rect. 3 1
491 167.76 temperature 10.0 270 > th dose independent rect. 4 23
492 167.76 radiation 1.0 270 < th dose dependent rect. 3 1
511 168.17 radiation 1.0 270 < th dose dependent rect. 8 17
513 168.20 wind 1.0 270 > th dose independent rect. 18 7
521 168.33 precipitation 0.1 270 < th dose independent rect. 14 15
522 168.33 precipitation 0.1 270 < th dose dependent rect. 14 15
523 168.35 radiation 1.0 270 < th dose dependent rect. 2 3
525 168.36 wind 1.0 270 > th dose independent rect. 1 4
535 168.49 radiation 10.0 270 < th dose dependent rect. 1 6
537 168.52 wind 7.0 270 < th dose independent rect. 1 4
544 168.57 radiation 1.0 270 < th dose independent rect. 2 3
550 168.60 wind 9.0 270 < th dose independent rect. 5 20
553 168.61 radiation 1.0 270 < th dose dependent rect. 5 20
561 168.65 temperature 10.0 270 > th dose independent rect. 1 4
563 168.65 temperature 30.0 270 < th dose independent rect. 1 4
564 168.65 humidity 50.0 270 > th dose independent rect. 1 4
567 168.65 atmosphere 995.0 270 > th dose independent rect. 1 4
568 168.65 atmosphere 1010.0 270 < th dose independent rect. 1 4
573 168.65 temperature 10.0 270 > th dose independent rect. 5 20
631 169.15 humidity 50.0 270 > th dose dependent rect. 3 1
638 169.22 radiation 20.0 30 < th dose independent rect. 3 6
640 169.22 wind 9.0 270 < th dose independent rect. 4 23
651 169.37 wind 9.0 270 < th dose dependent rect. 3 1
671 169.46 temperature 10.0 90 > th dose independent rect. 7 20
698 169.69 wind 9.0 90 < th dose independent rect. 7 20
703 169.74 precipitation 0.1 270 < th dose independent rect. 1 4
705 169.74 precipitation 0.1 270 < th dose dependent rect. 1 4
707 169.75 radiation 1.0 270 < th dose independent rect. 8 17
748 170.05 wind 7.0 270 < th dose independent rect. 24 7
753 170.08 atmosphere 995.0 270 > th dose independent rect. 5 20
779 170.18 wind 7.0 10 < th dose independent rect. 14 6
788 170.24 humidity 70.0 270 > th dose independent rect. 24 7
790 170.24 wind 9.0 270 < th dose independent rect. 7 17
801 170.33 temperature 10.0 270 > th dose independent rect. 24 7
803 170.33 temperature 30.0 270 < th dose independent rect. 24 7
804 170.33 humidity 50.0 270 > th dose independent rect. 24 7
806 170.33 atmosphere 995.0 270 > th dose independent rect. 24 7
807 170.33 atmosphere 1015.0 270 < th dose independent rect. 24 7
809 170.33 temperature 10.0 270 > th dose independent rect. 7 17
811 170.36 atmosphere 995.0 270 > th dose dependent rect. 2 3
827 170.56 atmosphere 995.0 270 > th dose dependent rect. 3 1
831 170.60 radiation 40.0 10 < th dose dependent rect. 3 8
836 170.64 wind 9.0 30 < th dose dependent rect. 3 17
843 170.80 precipitation 0.1 270 < th dose independent rect. 3 1
844 170.80 precipitation 0.1 270 < th dose dependent rect. 3 1
854 170.87 humidity 50.0 270 > th dose dependent rect. 2 3
870 171.07 humidity 70.0 10 > th dose independent rect. 3 5
875 171.15 wind 9.0 270 < th dose dependent rect. 2 3
877 171.20 precipitation 0.1 270 < th dose independent rect. 5 20
879 171.20 precipitation 0.1 270 < th dose dependent rect. 5 20
881 171.23 wind 1.0 10 > th dose independent rect. 14 6
882 171.23 temperature 15.0 270 > th dose independent rect. 11 8
884 171.25 precipitation 0.1 270 < th dose independent rect. 24 7
885 171.25 humidity 50.0 30 > th dose dependent rect. 3 6
886 171.25 precipitation 0.1 270 < th dose dependent rect. 24 7
903 171.38 wind 1.0 270 > th dose independent rect. 3 1
914 171.42 temperature 15.0 10 > th dose independent rect. 8 19
917 171.43 temperature 10.0 270 > th dose independent rect. 19 16
918 171.43 atmosphere 995.0 270 > th dose independent rect. 19 16
923 171.45 precipitation 0.1 90 < th dose independent rect. 7 20
924 171.45 precipitation 0.1 90 < th dose dependent rect. 7 20
932 171.52 wind 9.0 270 < th dose independent rect. 19 16
967 171.65 wind 9.0 10 < th dose independent rect. 3 5
968 171.65 temperature 10.0 10 > th dose independent rect. 3 5
970 171.65 temperature 30.0 10 < th dose independent rect. 3 5
971 171.65 humidity 50.0 10 > th dose independent rect. 3 5
973 171.65 atmosphere 995.0 10 > th dose independent rect. 3 5
974 171.65 atmosphere 1015.0 10 < th dose independent rect. 3 5
978 171.68 wind 9.0 10 < th dose independent rect. 8 19
981 171.73 precipitation 0.1 10 < th dose independent rect. 14 6
983 171.73 precipitation 0.1 10 < th dose dependent rect. 14 6
985 171.75 temperature 10.0 270 > th dose dependent rect. 11 8
987 171.76 temperature 10.0 10 > th dose dependent rect. 14 6