BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0412700 Os04g0412700|AK108347
         (261 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os04g0412700  Carbonic anhydrase, eukaryotic family protein       398   e-111

>Os04g0412700 Carbonic anhydrase, eukaryotic family protein
          Length = 261

 Score =  398 bits (1022), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 211/261 (80%), Positives = 211/261 (80%)

Query: 1   MPQINLESLFCGGGEAGSRVACETIALPGCSDAPAESRCVRIGDGAIWAELAGGAVLERD 60
           MPQINLESLFCGGGEAGSRVACETIALPGCSDAPAESRCVRIGDGAIWAELAGGAVLERD
Sbjct: 1   MPQINLESLFCGGGEAGSRVACETIALPGCSDAPAESRCVRIGDGAIWAELAGGAVLERD 60

Query: 61  GSTXXXXXXXXXXXXXXXXXXXXXXXXXESRRLPVTGKAAVVICGLPAGKMVAQKKRLSP 120
           GST                         ESRRLPVTGKAAVVICGLPAGKMVAQKKRLSP
Sbjct: 61  GSTKGSSNPKAAAASGKGKKGGPRPSSAESRRLPVTGKAAVVICGLPAGKMVAQKKRLSP 120

Query: 121 CLXXXXXXXXXXXXXXVFASEAVETDPGSPKVSCFGAVRSERSXXXXXXXXXXXVEDEER 180
           CL              VFASEAVETDPGSPKVSCFGAVRSERS           VEDEER
Sbjct: 121 CLGRGWRRAPAAAGARVFASEAVETDPGSPKVSCFGAVRSERSPATAAAAPAPPVEDEER 180

Query: 181 NGGCWASVAATLRHLCRSSSNPLEGELETNEWNATATSSPTVAALSPPRPVAVGLGEMKR 240
           NGGCWASVAATLRHLCRSSSNPLEGELETNEWNATATSSPTVAALSPPRPVAVGLGEMKR
Sbjct: 181 NGGCWASVAATLRHLCRSSSNPLEGELETNEWNATATSSPTVAALSPPRPVAVGLGEMKR 240

Query: 241 LASRRWPETMAVAGQGPVSAA 261
           LASRRWPETMAVAGQGPVSAA
Sbjct: 241 LASRRWPETMAVAGQGPVSAA 261



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.314    0.129    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,531,854
Number of extensions: 321428
Number of successful extensions: 798
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 797
Number of HSP's successfully gapped: 1
Length of query: 261
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 162
Effective length of database: 11,866,615
Effective search space: 1922391630
Effective search space used: 1922391630
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 155 (64.3 bits)