Os04g0412700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Carbonic anhydrase, eukaryotic family protein.
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Os04g0412700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Carbonic anhydrase, eukaryotic family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 278.33 | 0.784 | 3.33 | -0.348 | 0.254 | 0.921 | 0.539 | -2.78 | 0.0233 | 3.63 | 25.8 | 257 | -- | -- |
| 280.37 | 0.78 | 3.4 | -0.769 | 0.317 | 1.79 | -0.208 | -- | -0.188 | 4.37 | 21.34 | 214 | -- | -- |
| 279.05 | 0.778 | 3.33 | -0.384 | 0.261 | 0.948 | -- | -2.54 | 0.0215 | 3.57 | 25.79 | 275 | -- | -- |
| 280.32 | 0.78 | 3.4 | -0.761 | 0.302 | 1.8 | -- | -- | -0.159 | 4.37 | 21.27 | 198 | -- | -- |
| 280.75 | 0.78 | 3.33 | -0.334 | -- | 1.1 | -- | -2.74 | 0.0511 | -- | 28.54 | 204 | -- | -- |
| 305.99 | 0.82 | 3.44 | -1.11 | 0.429 | -- | -0.259 | -- | -0.32 | 3.89 | -- | -- | -- | -- |
| 306.19 | 0.819 | 3.44 | -1.11 | 0.427 | -- | -- | -- | -0.319 | 3.86 | -- | -- | -- | -- |
| 284.61 | 0.786 | 3.4 | -0.746 | -- | 1.76 | -- | -- | -0.125 | -- | 22 | 140 | -- | -- |
| 293.5 | 0.798 | 3.38 | -- | 0.27 | 2.31 | -- | -- | -0.0505 | 4.53 | 21.06 | 216 | -- | -- |
| 316.2 | 0.831 | 3.44 | -1.09 | -- | -- | -- | -- | -0.307 | -- | -- | -- | -- | -- |
| 338.62 | 0.861 | 3.41 | -- | 0.405 | -- | -- | -- | -0.195 | 3.9 | -- | -- | -- | -- |
| 297.21 | 0.803 | 3.38 | -- | -- | 2.34 | -- | -- | -0.0329 | -- | 21.27 | 216 | -- | -- |
| 347.63 | 0.87 | 3.41 | -- | -- | -- | -- | -- | -0.186 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 275.52 | temperature | 15 | 270 | > th | dose dependent | rect. | 8 | 19 |
| 3 | 276.06 | temperature | 20 | 4320 | > th | dose independent | rect. | 14 | 1 |
| 11 | 276.58 | temperature | 20 | 90 | > th | dose independent | rect. | 20 | 23 |
| 15 | 276.88 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 22 |
| 18 | 276.93 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 23 |
| 34 | 277.82 | temperature | 20 | 90 | > th | dose independent | rect. | 9 | 23 |
| 35 | 277.83 | temperature | 20 | 270 | > th | dose independent | rect. | 7 | 21 |
| 38 | 277.91 | temperature | 25 | 1440 | < th | dose dependent | rect. | 9 | 3 |
| 41 | 277.99 | temperature | 20 | 90 | < th | dose independent | rect. | 8 | 22 |
| 42 | 278.02 | temperature | 30 | 10 | < th | dose dependent | rect. | 4 | 20 |
| 43 | 278.03 | temperature | 30 | 10 | < th | dose dependent | rect. | 4 | 22 |
| 44 | 278.04 | temperature | 30 | 270 | < th | dose dependent | rect. | 13 | 22 |
| 49 | 278.14 | temperature | 20 | 90 | > th | dose independent | rect. | 14 | 23 |
| 52 | 278.17 | temperature | 20 | 270 | > th | dose independent | rect. | 8 | 19 |
| 56 | 278.22 | temperature | 20 | 720 | < th | dose independent | rect. | 9 | 11 |
| 63 | 278.32 | temperature | 15 | 270 | > th | dose dependent | rect. | 18 | 23 |
| 71 | 278.37 | temperature | 25 | 270 | < th | dose dependent | rect. | 8 | 23 |
| 76 | 278.42 | humidity | 50 | 14400 | < th | dose dependent | rect. | 17 | 20 |
| 93 | 278.57 | temperature | 20 | 90 | < th | dose independent | rect. | 3 | 23 |
| 94 | 278.57 | temperature | 15 | 90 | > th | dose dependent | rect. | 9 | 23 |
| 103 | 278.66 | humidity | 50 | 14400 | < th | dose dependent | rect. | 8 | 5 |
| 120 | 278.67 | wind | 9 | 4320 | < th | dose independent | rect. | 9 | 1 |
| 129 | 278.74 | temperature | 25 | 270 | < th | dose dependent | no | NA | NA |
| 132 | 278.76 | humidity | 60 | 14400 | < th | dose independent | rect. | 8 | 1 |
| 135 | 278.78 | humidity | 50 | 14400 | < th | dose dependent | rect. | 11 | 5 |
| 180 | 279.05 | temperature | 20 | 90 | < th | dose independent | rect. | 17 | 23 |
| 188 | 279.08 | humidity | 50 | 14400 | < th | dose dependent | sin | 6 | NA |
| 199 | 279.11 | temperature | 20 | 90 | < th | dose independent | rect. | 1 | 23 |
| 202 | 279.13 | humidity | 50 | 14400 | < th | dose dependent | rect. | 11 | 22 |
| 236 | 279.16 | temperature | 25 | 720 | < th | dose dependent | rect. | 7 | 16 |
| 242 | 279.19 | temperature | 20 | 90 | < th | dose independent | no | NA | NA |
| 250 | 279.23 | temperature | 20 | 90 | < th | dose independent | rect. | 13 | 23 |
| 254 | 279.25 | temperature | 25 | 720 | < th | dose dependent | rect. | 8 | 13 |
| 256 | 279.27 | humidity | 60 | 14400 | < th | dose dependent | rect. | 7 | 2 |
| 257 | 279.28 | temperature | 25 | 720 | < th | dose dependent | rect. | 7 | 18 |
| 285 | 279.34 | temperature | 20 | 90 | < th | dose independent | rect. | 15 | 23 |
| 286 | 279.35 | temperature | 20 | 720 | > th | dose independent | rect. | 6 | 16 |
| 301 | 279.40 | wind | 9 | 4320 | > th | dose independent | rect. | 9 | 1 |
| 309 | 279.42 | temperature | 20 | 90 | > th | dose independent | rect. | 11 | 16 |
| 313 | 279.43 | temperature | 20 | 90 | < th | dose independent | rect. | 23 | 23 |
| 332 | 279.51 | humidity | 50 | 14400 | < th | dose independent | rect. | 11 | 2 |
| 380 | 279.61 | temperature | 25 | 720 | < th | dose dependent | sin | 22 | NA |
| 395 | 279.67 | wind | 7 | 4320 | > th | dose dependent | rect. | 9 | 1 |
| 418 | 279.71 | temperature | 20 | 90 | < th | dose independent | rect. | 21 | 23 |
| 431 | 279.75 | temperature | 10 | 270 | > th | dose dependent | no | NA | NA |
| 432 | 279.75 | humidity | 60 | 14400 | < th | dose dependent | rect. | 19 | 14 |
| 433 | 279.76 | temperature | 20 | 90 | > th | dose independent | no | NA | NA |
| 441 | 279.80 | temperature | 20 | 1440 | < th | dose independent | rect. | 4 | 10 |
| 451 | 279.82 | humidity | 50 | 14400 | < th | dose dependent | no | NA | NA |
| 602 | 279.93 | temperature | 20 | 1440 | > th | dose independent | rect. | 4 | 10 |
| 725 | 280.29 | temperature | 20 | 720 | > th | dose independent | sin | 21 | NA |
| 744 | 280.34 | temperature | 25 | 1440 | < th | dose dependent | sin | 1 | NA |
| 757 | 280.39 | temperature | 15 | 4320 | > th | dose independent | rect. | 9 | 1 |
| 795 | 280.52 | temperature | 20 | 1440 | > th | dose independent | rect. | 4 | 15 |
| 806 | 280.56 | temperature | 15 | 4320 | > th | dose independent | rect. | 9 | 3 |
| 807 | 280.56 | temperature | 15 | 4320 | > th | dose independent | rect. | 7 | 5 |
| 810 | 280.56 | temperature | 20 | 4320 | < th | dose dependent | rect. | 1 | 15 |
| 822 | 280.61 | temperature | 20 | 1440 | < th | dose independent | rect. | 4 | 14 |
| 830 | 280.63 | temperature | 20 | 720 | < th | dose independent | rect. | 8 | 15 |
| 846 | 280.66 | temperature | 20 | 720 | < th | dose independent | rect. | 7 | 17 |
| 849 | 280.66 | temperature | 10 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 874 | 280.72 | temperature | 20 | 90 | > th | dose independent | rect. | 23 | 23 |
| 967 | 280.91 | temperature | 20 | 1440 | < th | dose independent | sin | 2 | NA |
| 982 | 280.93 | temperature | 20 | 1440 | > th | dose independent | sin | 2 | NA |
| 999 | 280.96 | wind | 9 | 14400 | > th | dose dependent | rect. | 19 | 1 |