BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0391900 Os04g0391900|AK101777
         (369 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os04g0391900  Amidohydrolase 2 family protein                     633   0.0  

>Os04g0391900 Amidohydrolase 2 family protein
          Length = 369

 Score =  633 bits (1633), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 313/360 (86%), Positives = 313/360 (86%)

Query: 10  STFNGSSLVQVXXXXXXXXXXXXXXXXXXXXXXXXTRRKLLLSSTCGTIXXXXXXXXXXX 69
           STFNGSSLVQV                        TRRKLLLSSTCGTI           
Sbjct: 10  STFNGSSLVQVPLLLLLLPHRHHLPACSPPPPPAATRRKLLLSSTCGTIAPRRRVRHGGA 69

Query: 70  XXXXXXXXXXXXIVVVDSHLHVWASPQQAAERYPYFPGQEPPIRGDVDLLLQCMDEAGVD 129
                       IVVVDSHLHVWASPQQAAERYPYFPGQEPPIRGDVDLLLQCMDEAGVD
Sbjct: 70  GRPAAPGGKGSAIVVVDSHLHVWASPQQAAERYPYFPGQEPPIRGDVDLLLQCMDEAGVD 129

Query: 130 GALIVQPINHMFDHSLVTSVLKKYPSKFIGCCLANPADDGSGIKQLEHLIVQEKYRAVRF 189
           GALIVQPINHMFDHSLVTSVLKKYPSKFIGCCLANPADDGSGIKQLEHLIVQEKYRAVRF
Sbjct: 130 GALIVQPINHMFDHSLVTSVLKKYPSKFIGCCLANPADDGSGIKQLEHLIVQEKYRAVRF 189

Query: 190 NPNLWPSGQKMTNEVGRSLFAKAGELGAPVGIMVMKGISTYIQEIEELCTDYPKTTVIFD 249
           NPNLWPSGQKMTNEVGRSLFAKAGELGAPVGIMVMKGISTYIQEIEELCTDYPKTTVIFD
Sbjct: 190 NPNLWPSGQKMTNEVGRSLFAKAGELGAPVGIMVMKGISTYIQEIEELCTDYPKTTVIFD 249

Query: 250 HMAFCKPPMNIEEEKAFTSFLELSRFPQIYVKYSALFRISREAYPYEDTSQLLSRVISSY 309
           HMAFCKPPMNIEEEKAFTSFLELSRFPQIYVKYSALFRISREAYPYEDTSQLLSRVISSY
Sbjct: 250 HMAFCKPPMNIEEEKAFTSFLELSRFPQIYVKYSALFRISREAYPYEDTSQLLSRVISSY 309

Query: 310 GANRIMWGSDFPFVVPECGYKGAKEAISHVAGKIPVSSSDLEWILGKTVTQLFQGAWVSA 369
           GANRIMWGSDFPFVVPECGYKGAKEAISHVAGKIPVSSSDLEWILGKTVTQLFQGAWVSA
Sbjct: 310 GANRIMWGSDFPFVVPECGYKGAKEAISHVAGKIPVSSSDLEWILGKTVTQLFQGAWVSA 369



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.321    0.136    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,443,245
Number of extensions: 439773
Number of successful extensions: 1034
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1030
Number of HSP's successfully gapped: 1
Length of query: 369
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 267
Effective length of database: 11,709,973
Effective search space: 3126562791
Effective search space used: 3126562791
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 157 (65.1 bits)