BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0389800 Os04g0389800|AK109628
         (639 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os04g0389800  Similar to Acetohydroxyacid synthase                232   6e-61
Os04g0389100                                                      133   4e-31

>Os04g0389800 Similar to Acetohydroxyacid synthase
          Length = 639

 Score =  232 bits (592), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 174/393 (44%), Positives = 174/393 (44%)

Query: 167 PAPHDRHRRVPGDAHRRVHPLHHQAXXXXXXXXXXXXXXXXXXXXXVHGSPRPGARRHPQ 226
           PAPHDRHRRVPGDAHRRVHPLHHQA                     VHGSPRPGARRHPQ
Sbjct: 167 PAPHDRHRRVPGDAHRRVHPLHHQAQLPNPRRRRHPPRHQRGLLPRVHGSPRPGARRHPQ 226

Query: 227 GHPAADGRAVLGRADAPPGVHLPAAEAAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 286
           GHPAADGRAVLGRADAPPGVHLPAAEAAG                               
Sbjct: 227 GHPAADGRAVLGRADAPPGVHLPAAEAAGRQPARRSHPPRRRRREARPLRRRRVLRVGLR 286

Query: 287 XXXXXXXXXXXXXXXXXXXREXXXXXXXXXXXXXXXWHCVXXXXXXXXXXXXXXXXXXXX 346
                              RE               WHCV                    
Sbjct: 287 AAALRGADGHPGDDHPHGHRELPQRRPALAADARDAWHCVRQLRRRQRRPPPRARRALRR 346

Query: 347 XXHRQSRGVREQGQDRARRHRPVGXXXXXXXXXXXXXXXXXXXXGHXXXXXXXXXXXXXX 406
             HRQSRGVREQGQDRARRHRPVG                    GH              
Sbjct: 347 PRHRQSRGVREQGQDRARRHRPVGAREEQAAARLHLRRRQARPAGHERDAGRTERRRRAQ 406

Query: 407 XXXXXXVALGAGEEEGRVPTGLQNVRRGDPAAVXXXXXXXXXXXXXXXXXXXXXXPDVGD 466
                 VALGAGEEEGRVPTGLQNVRRGDPAAV                      PDVGD
Sbjct: 407 EPRFQRVALGAGEEEGRVPTGLQNVRRGDPAAVRHPGARRGHQRGGHRRHGRRAAPDVGD 466

Query: 467 AALHLQEAQAVALVRRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDXXXXXXXXXX 526
           AALHLQEAQAVALVRRA                                D          
Sbjct: 467 AALHLQEAQAVALVRRAGRHGLRPACRRRRRGGQPGRHRGRHRRRRQPPDEHPGARHGPR 526

Query: 527 XXXXXXXDGAEQPAPGHGGAVGGQVLRRQQGAH 559
                  DGAEQPAPGHGGAVGGQVLRRQQGAH
Sbjct: 527 RGPAGEGDGAEQPAPGHGGAVGGQVLRRQQGAH 559




 Score =  100 bits (250), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 53/60 (88%), Positives = 53/60 (88%)

Query: 1  AAQTGRASATATRQGSSTRGCCRLHPRQPPSHAREVLDDGVPXXXXXXXNGHARARAGPD 60
          AAQTGRASATATRQGSSTRGCCRLHPRQPPSHAREVLDDGVP       NGHARARAGPD
Sbjct: 1  AAQTGRASATATRQGSSTRGCCRLHPRQPPSHAREVLDDGVPRRDRDRDNGHARARAGPD 60



>Os04g0389100 
          Length = 676

 Score =  133 bits (335), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 101/237 (42%), Positives = 103/237 (43%), Gaps = 4/237 (1%)

Query: 323 WHCVXXXXXXXXXXXXXXXXXXXXXXHRQSRGVREQGQDRARRHRPVGXXXXXXXXXXXX 382
           WHCV                      HRQSRGVREQGQDRARRHRPVG            
Sbjct: 345 WHCVRQLRRRQRRPPPRARRALRRPRHRQSRGVREQGQDRARRHRPVGAREEQAAARLHL 404

Query: 383 XXXXXXXXGHXXXXXXXXXXXXXXXXXXXXVALGAGEEEGRVPTGLQNVRRGDPAAVXXX 442
                   GH                    VA+GAGEEEGRVPTGLQNVRRGDPAAV   
Sbjct: 405 RRRQARPAGHERHAGTTTAQEPRFQR----VAVGAGEEEGRVPTGLQNVRRGDPAAVRHP 460

Query: 443 XXXXXXXXXXXXXXXXXXXPDVGDAALHLQEAQAVALVRRAXXXXXXXXXXXXXXXXXXX 502
                              PDVGDAALHLQEAQAVALVRRA                   
Sbjct: 461 GARRGDQRGSHRRHGRRAAPDVGDAALHLQEAQAVALVRRAGRHGLRPAGRRRRRGGQPG 520

Query: 503 XXXXXXXXXXXXXDXXXXXXXXXXXXXXXXXDGAEQPAPGHGGAVGGQVLRRQQGAH 559
                        D                 DGA+QPAPGHGGAVGGQVLRRQ GAH
Sbjct: 521 RHRGRHRRRRQPPDEHPGARHGPRREPAGEGDGAQQPAPGHGGAVGGQVLRRQPGAH 577




 Score =  107 bits (267), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 61/88 (69%), Positives = 63/88 (71%)

Query: 167 PAPHDRHRRVPGDAHRRVHPLHHQAXXXXXXXXXXXXXXXXXXXXXVHGSPRPGARRHPQ 226
           PAPHDRHRRVPGDAHRR HPLHHQA                      H SPRPGARRHPQ
Sbjct: 189 PAPHDRHRRVPGDAHRRAHPLHHQAQLPSPRRRRHPPCHQRGLLPRHHRSPRPGARRHPQ 248

Query: 227 GHPAADGRAVLGRADAPPGVHLPAAEAA 254
           GHPAADGRA+LGRADAP G+HLPAAEAA
Sbjct: 249 GHPAADGRAILGRADAPAGIHLPAAEAA 276



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.318    0.135    0.432 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,241,799
Number of extensions: 275629
Number of successful extensions: 934
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 927
Number of HSP's successfully gapped: 5
Length of query: 639
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 532
Effective length of database: 11,448,903
Effective search space: 6090816396
Effective search space used: 6090816396
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 159 (65.9 bits)