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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0389800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Acetohydroxyacid synthase.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.7 (0.0323) R2 : 0.398
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.707 (0.0847) R2dC : 0.0931 R2C : 0.0786
β3 : -0.96 (0.0843) R2dE : 0.173 R2E : 0.123
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.677 (0.0681) R2dN8 : 0.17 R2N8 : 0.114
σ : 0.605
deviance : 168.95
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_____
C
peak time of C : 5.62
E
wheather : temperature
threshold : 29.64
memory length : 1229
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
166.95 0.607 3.77 -0.767 0.709 -1.26 0.103 2.57 0.629 5.59 29.7 1258 -- --
167.86 0.603 3.71 -0.203 0.702 -1 0.0617 -- 0.652 5.69 29.7 1229 -- --
166.85 0.602 3.77 -0.784 0.713 -1.27 -- 2.67 0.623 5.61 29.72 1244 -- --
167.87 0.603 3.71 -0.208 0.708 -0.993 -- -- 0.657 5.64 29.69 1230 -- --
192.63 0.646 3.79 -0.792 -- -1.32 -- 2.61 0.58 -- 29.6 1248 -- --
214.98 0.687 3.72 0.102 0.789 -- 0.268 -- 0.627 4.86 -- -- -- --
215.16 0.687 3.72 0.102 0.79 -- -- -- 0.626 4.87 -- -- -- --
193.41 0.648 3.72 -0.201 -- -1.04 -- -- 0.675 -- 29.7 1254 -- --
168.95 0.605 3.7 -- 0.707 -0.96 -- -- 0.677 5.62 29.64 1229 -- --
248.13 0.736 3.72 0.131 -- -- -- -- 0.646 -- -- -- -- --
215.44 0.687 3.72 -- 0.792 -- -- -- 0.615 4.86 -- -- -- --
194.47 0.649 3.72 -- -- -1 -- -- 0.695 -- 29.7 1254 -- --
248.59 0.736 3.73 -- -- -- -- -- 0.632 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 166.03 humidity 90 720 < th dose dependent rect. 19 1
2 166.38 temperature 25 720 > th dose dependent rect. 19 1
7 168.45 humidity 80 720 < th dose independent rect. 19 1
8 168.58 temperature 30 720 < th dose independent rect. 16 3
12 169.40 humidity 70 720 > th dose independent rect. 17 10
19 169.90 temperature 25 720 > th dose dependent rect. 18 14
32 170.14 humidity 70 1440 < th dose independent rect. 16 4
44 170.15 humidity 70 1440 > th dose independent rect. 16 4
45 170.15 temperature 30 14400 > th dose dependent rect. 14 5
64 170.22 temperature 30 14400 > th dose dependent rect. 15 1
68 170.27 temperature 30 720 < th dose independent rect. 16 10
87 170.40 temperature 30 14400 > th dose dependent sin 13 NA
88 170.43 humidity 80 1440 < th dose dependent rect. 16 4
119 170.72 temperature 30 14400 > th dose independent rect. 15 4
133 170.75 temperature 30 14400 < th dose independent rect. 15 12
137 170.76 temperature 30 14400 < th dose independent rect. 15 5
139 170.76 temperature 30 14400 < th dose independent rect. 15 16
142 170.77 temperature 30 14400 < th dose independent rect. 15 9
148 170.79 temperature 30 14400 < th dose independent rect. 16 1
158 170.84 temperature 30 14400 > th dose independent rect. 16 1
167 170.88 humidity 70 1440 > th dose independent sin 13 NA
255 171.18 temperature 30 14400 > th dose independent sin 13 NA
260 171.25 temperature 30 14400 < th dose independent sin 13 NA
339 171.55 humidity 70 1440 < th dose independent sin 13 NA
420 171.90 temperature 30 14400 > th dose independent rect. 11 8
435 171.92 temperature 30 14400 < th dose independent rect. 15 22
438 171.94 temperature 30 720 < th dose independent rect. 15 13
460 171.96 temperature 30 14400 > th dose independent rect. 14 23
491 171.99 temperature 30 14400 > th dose dependent no NA NA
620 172.08 temperature 30 14400 < th dose independent rect. 11 16
623 172.08 temperature 30 14400 < th dose independent rect. 11 18
628 172.09 temperature 30 14400 < th dose independent rect. 11 8
630 172.09 temperature 30 14400 < th dose independent rect. 11 13
699 172.21 humidity 80 1440 < th dose dependent rect. 16 16
761 172.38 temperature 30 14400 > th dose independent no NA NA
855 172.40 temperature 30 14400 > th dose independent rect. 12 1
884 172.46 temperature 30 14400 < th dose independent rect. 23 20
898 172.47 temperature 30 14400 < th dose independent no NA NA
904 172.47 temperature 30 14400 < th dose independent rect. 4 15