BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0386900 Os04g0386900|AK119999
         (189 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os04g0386900  Transcriptional factor B3 family protein            283   5e-77
Os06g0112300  Transcriptional factor B3 family protein             98   3e-21

>Os04g0386900 Transcriptional factor B3 family protein
          Length = 189

 Score =  283 bits (724), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 147/189 (77%), Positives = 147/189 (77%)

Query: 1   TELRCSSPESSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKVARHG 60
           TELRCSSPESSG                                          KVARHG
Sbjct: 1   TELRCSSPESSGDAGAEDPAAVDAAEESGGEGGSGHIAAGTEAAPPRPPEPEPEKVARHG 60

Query: 61  VLPLLGKPYFTCIMCKSHVQPPFQVVVPRSFAPLLPSRTTPATLSWRGRSWGMRFTGGRL 120
           VLPLLGKPYFTCIMCKSHVQPPFQVVVPRSFAPLLPSRTTPATLSWRGRSWGMRFTGGRL
Sbjct: 61  VLPLLGKPYFTCIMCKSHVQPPFQVVVPRSFAPLLPSRTTPATLSWRGRSWGMRFTGGRL 120

Query: 121 IQRLEAGWRGFAVDNDLRLGDGCVFELLVGGGGEQERVEFRVQVLRAEIPARIRGRAGGY 180
           IQRLEAGWRGFAVDNDLRLGDGCVFELLVGGGGEQERVEFRVQVLRAEIPARIRGRAGGY
Sbjct: 121 IQRLEAGWRGFAVDNDLRLGDGCVFELLVGGGGEQERVEFRVQVLRAEIPARIRGRAGGY 180

Query: 181 TSATPIVID 189
           TSATPIVID
Sbjct: 181 TSATPIVID 189



>Os06g0112300 Transcriptional factor B3 family protein
          Length = 175

 Score = 98.2 bits (243), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 55/127 (43%), Positives = 76/127 (59%), Gaps = 9/127 (7%)

Query: 66  GKPYFTCIMCKSHVQPPFQVVVPRSFAPLL--PSRTTPATLSWRGRSWGMRFTGGRLIQR 123
           G P+FT ++ KSH+ P FQ+ +P  F   L  P   T A L   G+SW   + G   +++
Sbjct: 52  GNPFFTALIAKSHLHPKFQMWIPPRFQHRLAEPEARTAAVLHSGGKSWATSYCGHLKMKK 111

Query: 124 LEAGWRGFAVDNDLRLGDGCVFELLVGG--GGEQERVEFRVQVLRAEIPARIRGRAGGYT 181
           L+AGW  FAVDN L +GD CVFEL+  G  GG    +EF+VQ+LR  +PA +   + G T
Sbjct: 112 LDAGWSEFAVDNRLLVGDACVFELVAMGAAGG----LEFQVQILRGGLPAEVV-TSKGLT 166

Query: 182 SATPIVI 188
           S  PI+I
Sbjct: 167 SDQPILI 173



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.324    0.141    0.452 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,362,843
Number of extensions: 289841
Number of successful extensions: 731
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 732
Number of HSP's successfully gapped: 2
Length of query: 189
Length of database: 17,035,801
Length adjustment: 95
Effective length of query: 94
Effective length of database: 12,075,471
Effective search space: 1135094274
Effective search space used: 1135094274
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 153 (63.5 bits)