BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0382700 Os04g0382700|AK103116
         (947 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os04g0382700  Protein prenyltransferase domain containing pr...  1935   0.0  
AK111194                                                          409   e-114

>Os04g0382700 Protein prenyltransferase domain containing protein
          Length = 947

 Score = 1935 bits (5012), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 934/947 (98%), Positives = 934/947 (98%)

Query: 1   MYQWRKFEFFEEKAAGRGVPGEIASRVSCCSGGRGRVAVGCDDGTVGLLDRGFRLSYGFQ 60
           MYQWRKFEFFEEKAAGRGVPGEIASRVSCCSGGRGRVAVGCDDGTVGLLDRGFRLSYGFQ
Sbjct: 1   MYQWRKFEFFEEKAAGRGVPGEIASRVSCCSGGRGRVAVGCDDGTVGLLDRGFRLSYGFQ 60

Query: 61  AYASSVLFLQQLKQRNVLITVGDDDQPSSLSSAICLKVFDLDKVQEEGSSTTSPFCVQIL 120
           AYASSVLFLQQLKQRNVLITVGDDDQPSSLSSAICLKVFDLDKVQEEGSSTTSPFCVQIL
Sbjct: 61  AYASSVLFLQQLKQRNVLITVGDDDQPSSLSSAICLKVFDLDKVQEEGSSTTSPFCVQIL 120

Query: 121 RIFTKQFPQAKITSFVVLEEAPPILLIAIGLDNGSIYCIKGDIARERITRFMLQVEDGTS 180
           RIFTKQFPQAKITSFVVLEEAPPILLIAIGLDNGSIYCIKGDIARERITRFMLQVEDGTS
Sbjct: 121 RIFTKQFPQAKITSFVVLEEAPPILLIAIGLDNGSIYCIKGDIARERITRFMLQVEDGTS 180

Query: 181 LPITGLGFRVEGQAHQLFAVTPSSITLFSLHDHPPRRQTLDQIGCETNAVAMSDRMDLII 240
           LPITGLGFRVEGQAHQLFAVTPSSITLFSLHDHPPRRQTLDQIGCETNAVAMSDRMDLII
Sbjct: 181 LPITGLGFRVEGQAHQLFAVTPSSITLFSLHDHPPRRQTLDQIGCETNAVAMSDRMDLII 240

Query: 241 GRPEAVYFYEIDGRGPCWAFDGEKKFVGWFRGYLLCIIEDQRSRKNTLNVYDLKNRLIAH 300
           GRPEAVYFYEIDGRGPCWAFDGEKKFVGWFRGYLLCIIEDQRSRKNTLNVYDLKNRLIAH
Sbjct: 241 GRPEAVYFYEIDGRGPCWAFDGEKKFVGWFRGYLLCIIEDQRSRKNTLNVYDLKNRLIAH 300

Query: 301 SMPVGDVSHLVSEWGYIILIMSDKKILCIGEKDMESKLDMLFKKNLYTVAINLVQSQQAD 360
           SMPVGDVSHLVSEWGYIILIMSDKKILCIGEKDMESKLDMLFKKNLYTVAINLVQSQQAD
Sbjct: 301 SMPVGDVSHLVSEWGYIILIMSDKKILCIGEKDMESKLDMLFKKNLYTVAINLVQSQQAD 360

Query: 361 PASTAEVLRKYGDHLYGKQEYDEAMSQYIHTIGHLEPSYVIQKFLDAKRIYNLTNYLEKL 420
           PASTAEVLRKYGDHLYGKQEYDEAMSQYIHTIGHLEPSYVIQKFLDAKRIYNLTNYLEKL
Sbjct: 361 PASTAEVLRKYGDHLYGKQEYDEAMSQYIHTIGHLEPSYVIQKFLDAKRIYNLTNYLEKL 420

Query: 421 HDRGLASKDHTTLLLNCYTKLKDVEKLNHFIKDEDGVGEIKFDVETAIRVCRAAGYHEHA 480
           HDRGLASKDHTTLLLNCYTKLKDVEKLNHFIKDEDGVGEIKFDVETAIRVCRAAGYHEHA
Sbjct: 421 HDRGLASKDHTTLLLNCYTKLKDVEKLNHFIKDEDGVGEIKFDVETAIRVCRAAGYHEHA 480

Query: 481 MFVAKKAGRHELYLKILLEDLGRYDEALQYISSLEANQAGLTVKEYGKILVEHRPAETVE 540
           MFVAKKAGRHELYLKILLEDLGRYDEALQYISSLEANQAGLTVKEYGKILVEHRPAETVE
Sbjct: 481 MFVAKKAGRHELYLKILLEDLGRYDEALQYISSLEANQAGLTVKEYGKILVEHRPAETVE 540

Query: 541 ILLRLCTDGGDPMTRRGSNSMHLLMIPSPMDFVNIFVHSPKHLMEFLENYTKAVKDSPAQ 600
           ILLRLCTDGGDPMTRRGSNSMHLLMIPSPMDFVNIFVHSPKHLMEFLENYTKAVKDSPAQ
Sbjct: 541 ILLRLCTDGGDPMTRRGSNSMHLLMIPSPMDFVNIFVHSPKHLMEFLENYTKAVKDSPAQ 600

Query: 601 TEIHNTLLELYISKDLSFPSMSQENGFEEQNSKERKGKEVANGYKSGPREKGNLGKEDMN 660
           TEIHNTLLELYISKDLSFPSMSQENGFEEQNSKERKGKEVANGYKSGPREKGNLGKEDMN
Sbjct: 601 TEIHNTLLELYISKDLSFPSMSQENGFEEQNSKERKGKEVANGYKSGPREKGNLGKEDMN 660

Query: 661 VAKDIVDRQRKGLALLKSAWTSEMDDPLYDVDLALIICNANAFKDGXXXXXXXXXXXXXV 720
           VAKDIVDRQRKGLALLKSAWTSEMDDPLYDVDLALIICNANAFKDG             V
Sbjct: 661 VAKDIVDRQRKGLALLKSAWTSEMDDPLYDVDLALIICNANAFKDGLLFLYEKLKLFKEV 720

Query: 721 ISCYKQAHDHEGLIACCKKLGDSSQGGDPSLWGDLLKYFSELGEDCSKEVKEVLTYIEKE 780
           ISCYKQAHDHEGLIACCKKLGDSSQGGDPSLWGDLLKYFSELGEDCSKEVKEVLTYIEKE
Sbjct: 721 ISCYKQAHDHEGLIACCKKLGDSSQGGDPSLWGDLLKYFSELGEDCSKEVKEVLTYIEKE 780

Query: 781 DVLPPIVVLETLSKNPCLTLSVVKDYIARKLEQESKLIEEDRKSIDKYQDETELMKREIE 840
           DVLPPIVVLETLSKNPCLTLSVVKDYIARKLEQESKLIEEDRKSIDKYQDETELMKREIE
Sbjct: 781 DVLPPIVVLETLSKNPCLTLSVVKDYIARKLEQESKLIEEDRKSIDKYQDETELMKREIE 840

Query: 841 DLKTNAKVFQLSKCTTCTFTLDLPAVHFMCMHSFHLRCLGDNEKECPECAPEYRSVMEAK 900
           DLKTNAKVFQLSKCTTCTFTLDLPAVHFMCMHSFHLRCLGDNEKECPECAPEYRSVMEAK
Sbjct: 841 DLKTNAKVFQLSKCTTCTFTLDLPAVHFMCMHSFHLRCLGDNEKECPECAPEYRSVMEAK 900

Query: 901 QKLEHNARDHDLFFRQLRGSKDGFSVVADYFSKGIVSKTAIPPENGR 947
           QKLEHNARDHDLFFRQLRGSKDGFSVVADYFSKGIVSKTAIPPENGR
Sbjct: 901 QKLEHNARDHDLFFRQLRGSKDGFSVVADYFSKGIVSKTAIPPENGR 947



>AK111194 
          Length = 1053

 Score =  409 bits (1050), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 220/561 (39%), Positives = 343/561 (61%), Gaps = 30/561 (5%)

Query: 1   MYQWRKFEFFEEKAAGRGVPGEIAS-----RVSCCSGGRGRVAVGCDDGTVGLLDRGFRL 55
           M+QWR+F+FFE++        E        + +C + GRG +  G   G + +++R F L
Sbjct: 1   MFQWRRFQFFEKELLMEEDGKEEMKLFKDFKPTCSTSGRGHLVFGDGKGVIRIVNRDF-L 59

Query: 56  SYGFQAYASSVLFLQQLKQRNVLITVGDDDQPSSLSSAICLKVFDLDKVQEEGSSTTSPF 115
              F AY   V+ + QLK+ N+L+++G+D     +     +K++ LDK  + G+    PF
Sbjct: 60  QVQFPAYEIDVVAVHQLKRSNLLVSIGND-----VIDGTSIKIWRLDKEDQFGN----PF 110

Query: 116 CVQILRIFTKQFPQAKITSFVVLEEAPPILLIAIGLDNGSIYCIKGDIARERITRFMLQV 175
           C + +++F ++FP   +T F VLE+   +  +AIGL NG++    G+I R+R  +  L  
Sbjct: 111 CARTIKVFNQKFPPVPVTCFSVLED---LTQLAIGLGNGAVMLFDGNILRDRACKQELIQ 167

Query: 176 EDGTSLPITGLGFR-VEGQ--AHQLFAVTPSSITLFSLHDHP-----PRRQTLDQIGCET 227
             G    +TG+ FR VE +  A  LF VT   +  +     P     P+     + G E 
Sbjct: 168 NLGPC--VTGVHFREVESKHNAVSLFVVTSEKVISYFTKAKPTKDGYPKVVVDGEGGSEL 225

Query: 228 NAVAMSDRMDLIIGRPEAVYFYEIDGRGPCWAFDGEKKFVGWFRGYLLCIIEDQRS-RKN 286
               ++D   L+ GR +AVYFYE + +  C+ F+G KK + WF  YL+ + E  +  +KN
Sbjct: 226 RCSELTDDKKLVAGRDKAVYFYEAEEKSICFGFEGMKKSLSWFNSYLIVVCESGKDIKKN 285

Query: 287 TLNVYDLKNRLIAHSMPVGDVSHLVSEWGYIILIMSDKKILCIGEKDMESKLDMLFKKNL 346
           +L +YDLKN+ IA++     + +LVSEWG I ++   +++  + E+D+ +K++MLF+KNL
Sbjct: 286 SLTIYDLKNKFIAYAAKFESIVNLVSEWGSIFVLTDTQRVYQLSERDLPTKMEMLFRKNL 345

Query: 347 YTVAINLVQSQQADPASTAEVLRKYGDHLYGKQEYDEAMSQYIHTIGHLEPSYVIQKFLD 406
           Y++AI+L  SQ  D +   ++ + YGDHLY K +YD A+SQY+ TI ++EPSYVI+KFLD
Sbjct: 346 YSIAISLANSQDCDKSYIIDIFQMYGDHLYSKGDYDGAISQYVETIKYVEPSYVIRKFLD 405

Query: 407 AKRIYNLTNYLEKLHDRGLASKDHTTLLLNCYTKLKDVEKLNHFI-KDEDGVGEIKFDVE 465
           A+RI+NLT YL+ LH++  A+ DHTTLLLNCYTKLKDV+ L+ F+  D     ++ FDV+
Sbjct: 406 AQRIHNLTRYLQALHEQERANTDHTTLLLNCYTKLKDVKTLDEFVMSDGSRDKKVNFDVD 465

Query: 466 TAIRVCRAAGYHEHAMFVAKKAGRHELYLKILLEDLGRYDEALQYISSLEANQAGLTVKE 525
           TAI+  R AGY  HA+++A+K   H +YLKI L+D   + +AL +I+SL+   A   ++E
Sbjct: 466 TAIKTLRQAGYFRHALYLAEKHRNHAMYLKIQLDDESNFADALNHIASLDFVAAERYIRE 525

Query: 526 YGKILVEHRPAETVEILLRLC 546
           YGK LV   P ET ++L+RLC
Sbjct: 526 YGKKLVNALPEETTQLLMRLC 546




 Score =  241 bits (615), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 141/387 (36%), Positives = 205/387 (52%), Gaps = 25/387 (6%)

Query: 571  DFVNIFVHSPKHLMEFLENYTKAVKDSPAQTEIHNTLLELYISKDLSFPSMSQENGFEEQ 630
            +F++ FV    +L  FLE+      D  A   I+NTLLELY+  D   P++   +     
Sbjct: 666  EFIHFFVDRADYLQRFLEHIKDT--DPKASNVIYNTLLELYLRPDAEGPTIGGASAAAGA 723

Query: 631  NS----------KERKGKEVANGYKSGPREKGNLGKEDMNVAKDIVDRQRKGLALLKSAW 680
             +          K+ K     +  KSG             +AK+   R  K +ALLKS+ 
Sbjct: 724  GAGAGAGAGADAKDVKLSSSPSDDKSGGAAAVAGAGASGVMAKE-HPRHHKIMALLKSSQ 782

Query: 681  TSEMDDPLYDVDLALIICNANAFKDGXXXXXXXXXXXXXVISCYKQAHDHEGLIACCKKL 740
                    YD D AL++C    F  G             ++  Y +      ++A CKK 
Sbjct: 783  AR------YDTDHALVLCKMYKFFRGMVYLYEKLKLYHEIVQHYMENDARNKILAACKKY 836

Query: 741  GDSSQGGDPSLWGDLLKYFSELGEDCSKEVKEVLTYIEKEDVLPPIVVLETLSKNPCLTL 800
            G +    DP LW   L +F+   E C KE+ +VL  IE+ ++LPP++V++ LSKN    L
Sbjct: 837  GPN----DPQLWVQALTFFAAKAEVCEKEIIQVLENIERHNLLPPLMVVQILSKNHTKPL 892

Query: 801  SVVKDYIARKLEQESKLIEEDRKSIDKYQDETELMKREIEDLKTNAKVFQLSKCTTCTFT 860
            SVVKDYI R L+ E+ +I  D++ I +Y DET   + +I  LKT A  FQ +KC  CT +
Sbjct: 893  SVVKDYIIRSLQAENAVIVADQREIQRYHDETAQHRDDIHQLKTRANTFQGTKCHACTSS 952

Query: 861  LDLPAVHFMCMHSFHLRCLGDNEKECPECAPEYRSVMEAKQKLEHNARDHDLFFRQLRGS 920
            L LPAVHF+C+HS H  C+ DN ++CP CAPE+R VM+ ++ +  +A  HD FF+QL  S
Sbjct: 953  LSLPAVHFLCLHSLHEHCVSDNSRQCPSCAPEFRKVMDMQEAMRASASQHDKFFKQLEDS 1012

Query: 921  KDGFSVVADYFSKGIVSKTAIPPENGR 947
             DGFS VA+YF +G+ +K    PE+ +
Sbjct: 1013 ADGFSTVAEYFGRGVFNKA--KPEDAK 1037



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.320    0.137    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 32,099,898
Number of extensions: 1365340
Number of successful extensions: 3532
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 3523
Number of HSP's successfully gapped: 3
Length of query: 947
Length of database: 17,035,801
Length adjustment: 110
Effective length of query: 837
Effective length of database: 11,292,261
Effective search space: 9451622457
Effective search space used: 9451622457
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 161 (66.6 bits)