Os04g0382700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein prenyltransferase domain containing protein.
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Os04g0382700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein prenyltransferase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 16.51 | 0.191 | 10.3 | 0.241 | 0.0704 | -0.267 | -0.399 | 0.142 | 0.106 | 1.79 | 1015 | 6300 | -- | -- |
| 16.56 | 0.19 | 10.3 | 0.207 | 0.0682 | -0.284 | -0.396 | -- | 0.104 | 1.69 | 1015 | 6282 | -- | -- |
| 17.13 | 0.193 | 10.3 | 0.25 | 0.068 | -0.264 | -- | 0.134 | 0.103 | 1.98 | 1015 | 6378 | -- | -- |
| 17.14 | 0.193 | 10.3 | 0.269 | 0.0709 | -0.309 | -- | -- | 0.108 | 2.31 | 1015 | 6497 | -- | -- |
| 17.42 | 0.194 | 10.3 | 0.267 | -- | -0.261 | -- | 0.142 | 0.112 | -- | 1015 | 6642 | -- | -- |
| 19.55 | 0.207 | 10.3 | 0.118 | 0.0671 | -- | -0.386 | -- | 0.0381 | 1.41 | -- | -- | -- | -- |
| 20.15 | 0.21 | 10.3 | 0.13 | 0.0687 | -- | -- | -- | 0.0401 | 1.98 | -- | -- | -- | -- |
| 17.44 | 0.194 | 10.3 | 0.274 | -- | -0.306 | -- | -- | 0.109 | -- | 1015 | 6583 | -- | -- |
| 18.25 | 0.199 | 10.3 | -- | 0.0744 | -0.234 | -- | -- | 0.0671 | 2.29 | 1014 | 5954 | -- | -- |
| 20.44 | 0.211 | 10.3 | 0.133 | -- | -- | -- | -- | 0.0417 | -- | -- | -- | -- | -- |
| 20.6 | 0.212 | 10.3 | -- | 0.0711 | -- | -- | -- | 0.0255 | 2.02 | -- | -- | -- | -- |
| 18.59 | 0.201 | 10.3 | -- | -- | -0.233 | -- | -- | 0.0679 | -- | 1014 | 5954 | -- | -- |
| 20.91 | 0.213 | 10.3 | -- | -- | -- | -- | -- | 0.0269 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 16.79 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 10 | 1 |
| 2 | 16.83 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 9 | 3 |
| 4 | 16.95 | humidity | 70.0 | 1440 | < th | dose independent | rect. | 10 | 1 |
| 5 | 16.95 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 4 | 6 |
| 6 | 16.95 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 4 | 6 |
| 7 | 16.97 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 4 | 6 |
| 8 | 16.98 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 8 | 5 |
| 9 | 16.99 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 5 | 3 |
| 12 | 16.99 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 9 | 3 |
| 13 | 16.99 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 5 | 3 |
| 15 | 17.00 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 8 | 5 |
| 17 | 17.01 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 5 | 3 |
| 21 | 17.01 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 4 | 6 |
| 25 | 17.02 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 5 | 3 |
| 46 | 17.09 | humidity | 60.0 | 1440 | > th | dose dependent | rect. | 10 | 1 |
| 69 | 17.15 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 19 | 17 |
| 132 | 17.29 | atmosphere | 1015.0 | 4320 | < th | dose independent | rect. | 2 | 18 |
| 134 | 17.29 | atmosphere | 1015.0 | 4320 | > th | dose dependent | rect. | 24 | 16 |
| 138 | 17.30 | atmosphere | 1015.0 | 4320 | > th | dose independent | rect. | 2 | 18 |
| 152 | 17.31 | atmosphere | 1015.0 | 4320 | < th | dose independent | rect. | 2 | 15 |
| 176 | 17.32 | atmosphere | 1015.0 | 4320 | > th | dose independent | sin | 1 | NA |
| 177 | 17.32 | atmosphere | 1015.0 | 4320 | < th | dose independent | sin | 0 | NA |
| 181 | 17.32 | atmosphere | 1015.0 | 4320 | < th | dose independent | rect. | 6 | 10 |
| 182 | 17.32 | atmosphere | 1015.0 | 4320 | > th | dose independent | rect. | 6 | 11 |
| 193 | 17.32 | atmosphere | 1015.0 | 4320 | > th | dose independent | rect. | 2 | 15 |
| 225 | 17.33 | atmosphere | 1015.0 | 4320 | > th | dose independent | rect. | 7 | 9 |
| 254 | 17.33 | atmosphere | 1015.0 | 4320 | > th | dose dependent | sin | 1 | NA |
| 299 | 17.34 | atmosphere | 1015.0 | 4320 | > th | dose dependent | rect. | 6 | 9 |
| 505 | 17.39 | humidity | 80.0 | 1440 | < th | dose independent | sin | 4 | NA |
| 531 | 17.39 | atmosphere | 1015.0 | 4320 | > th | dose dependent | no | NA | NA |
| 560 | 17.40 | atmosphere | 1015.0 | 4320 | < th | dose independent | no | NA | NA |
| 585 | 17.40 | atmosphere | 1015.0 | 4320 | < th | dose independent | rect. | 6 | 22 |
| 586 | 17.40 | atmosphere | 1015.0 | 4320 | < th | dose independent | rect. | 18 | 22 |
| 617 | 17.41 | atmosphere | 1015.0 | 4320 | > th | dose independent | no | NA | NA |
| 618 | 17.41 | atmosphere | 1015.0 | 4320 | < th | dose independent | rect. | 11 | 2 |
| 637 | 17.41 | atmosphere | 1015.0 | 4320 | > th | dose independent | rect. | 6 | 21 |
| 645 | 17.41 | atmosphere | 1015.0 | 4320 | > th | dose independent | rect. | 18 | 22 |
| 657 | 17.41 | atmosphere | 1015.0 | 4320 | > th | dose independent | rect. | 16 | 23 |
| 670 | 17.41 | atmosphere | 1015.0 | 4320 | < th | dose independent | rect. | 14 | 23 |
| 676 | 17.41 | atmosphere | 1015.0 | 4320 | > th | dose dependent | rect. | 2 | 1 |
| 677 | 17.41 | humidity | 50.0 | 4320 | < th | dose dependent | rect. | 10 | 4 |
| 835 | 17.43 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 10 | 1 |
| 851 | 17.44 | humidity | 80.0 | 1440 | > th | dose independent | sin | 4 | NA |
| 854 | 17.44 | atmosphere | 1015.0 | 4320 | < th | dose independent | rect. | 3 | 1 |
| 949 | 17.45 | humidity | 50.0 | 14400 | < th | dose dependent | rect. | 16 | 21 |
| 952 | 17.46 | atmosphere | 1015.0 | 4320 | > th | dose independent | rect. | 2 | 1 |
| 953 | 17.46 | atmosphere | 1015.0 | 4320 | < th | dose independent | rect. | 1 | 8 |