BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0340800 Os04g0340800|AK121548
         (89 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os04g0340800  Hypothetical protein                                143   3e-35
Os08g0367300                                                       89   8e-19
Os10g0343500  Conserved hypothetical protein                       78   1e-15
Os02g0129000  Conserved hypothetical protein                       78   2e-15

>Os04g0340800 Hypothetical protein
          Length = 89

 Score =  143 bits (360), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 69/69 (100%), Positives = 69/69 (100%)

Query: 21 GNMNQNDHMQQGKNNSNAYKKQQCNIVDIMDANSLEIGTNVFLKSWKNRNKNVVVASIVS 80
          GNMNQNDHMQQGKNNSNAYKKQQCNIVDIMDANSLEIGTNVFLKSWKNRNKNVVVASIVS
Sbjct: 21 GNMNQNDHMQQGKNNSNAYKKQQCNIVDIMDANSLEIGTNVFLKSWKNRNKNVVVASIVS 80

Query: 81 CDPTRKVAG 89
          CDPTRKVAG
Sbjct: 81 CDPTRKVAG 89



>Os08g0367300 
          Length = 775

 Score = 89.0 bits (219), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 39/66 (59%), Positives = 49/66 (74%)

Query: 24  NQNDHMQQGKNNSNAYKKQQCNIVDIMDANSLEIGTNVFLKSWKNRNKNVVVASIVSCDP 83
           NQ+ HM        AYKKQQC+ +D +  NS+E+GT VFLKSWKNRN N+ +A+IVSCDP
Sbjct: 658 NQDSHMVHAHKVGGAYKKQQCSKMDFITDNSMEVGTKVFLKSWKNRNTNMALATIVSCDP 717

Query: 84  TRKVAG 89
           TR+V G
Sbjct: 718 TRRVGG 723



>Os10g0343500 Conserved hypothetical protein
          Length = 643

 Score = 78.2 bits (191), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 34/50 (68%), Positives = 41/50 (82%)

Query: 40  KKQQCNIVDIMDANSLEIGTNVFLKSWKNRNKNVVVASIVSCDPTRKVAG 89
           KKQQCN +D +  NS+E+GT VFLKSWKNRN NV +A+IVSCDPT +V G
Sbjct: 553 KKQQCNKMDFITDNSMEVGTKVFLKSWKNRNTNVALATIVSCDPTHRVGG 602



>Os02g0129000 Conserved hypothetical protein
          Length = 750

 Score = 77.8 bits (190), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 33/50 (66%), Positives = 42/50 (84%)

Query: 40  KKQQCNIVDIMDANSLEIGTNVFLKSWKNRNKNVVVASIVSCDPTRKVAG 89
           K+QQC+ +D +  NS+E+GT VFLKSWKNRN NV +A+IVSCDPTR+V G
Sbjct: 638 KEQQCSKMDFITDNSMEVGTKVFLKSWKNRNTNVALATIVSCDPTRRVGG 687



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.312    0.125    0.365 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,235,100
Number of extensions: 65161
Number of successful extensions: 112
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 112
Number of HSP's successfully gapped: 4
Length of query: 89
Length of database: 17,035,801
Length adjustment: 59
Effective length of query: 30
Effective length of database: 13,955,175
Effective search space: 418655250
Effective search space used: 418655250
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 149 (62.0 bits)