Os04g0340800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os04g0340800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 119.75 | 0.514 | 12.3 | -3.26 | 0.811 | -1.51 | 0.614 | -0.363 | -0.344 | 1.12 | 25.15 | 167 | -- | -- |
| 119.9 | 0.51 | 12.3 | -3.31 | 0.811 | -1.47 | 0.539 | -- | -0.356 | 1.17 | 25.33 | 169 | -- | -- |
| 120.96 | 0.512 | 12.3 | -3.31 | 0.792 | -1.48 | -- | -0.0746 | -0.339 | 0.851 | 24.76 | 167 | -- | -- |
| 120.95 | 0.512 | 12.3 | -3.33 | 0.788 | -1.48 | -- | -- | -0.342 | 0.884 | 24.78 | 169 | -- | -- |
| 139.95 | 0.551 | 12.3 | -3.47 | -- | -1.4 | -- | 0.664 | -0.372 | -- | 27.44 | 869 | -- | -- |
| 151.31 | 0.577 | 12.2 | -2.95 | 0.594 | -- | 0.429 | -- | -0.0604 | 0.402 | -- | -- | -- | -- |
| 152.07 | 0.577 | 12.2 | -2.96 | 0.593 | -- | -- | -- | -0.0619 | 0.227 | -- | -- | -- | -- |
| 140.2 | 0.551 | 12.3 | -3.37 | -- | -1.45 | -- | -- | -0.374 | -- | 27.23 | 892 | -- | -- |
| 383.04 | 0.912 | 12.2 | -- | 0.504 | 0.22 | -- | -- | 0.294 | 23.7 | 34.93 | 2 | -- | -- |
| 174.2 | 0.617 | 12.2 | -2.94 | -- | -- | -- | -- | -0.0529 | -- | -- | -- | -- | -- |
| 383.56 | 0.916 | 12.2 | -- | 0.554 | -- | -- | -- | 0.268 | 23.9 | -- | -- | -- | -- |
| 395.64 | 0.926 | 12.1 | -- | -- | 0.69 | -- | -- | 0.353 | -- | 39.56 | 17 | -- | -- |
| 402.86 | 0.937 | 12.2 | -- | -- | -- | -- | -- | 0.274 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 118.60 | temperature | 25 | 90 | < th | dose dependent | rect. | 23 | 22 |
| 3 | 119.32 | temperature | 25 | 270 | < th | dose dependent | rect. | 21 | 22 |
| 7 | 119.64 | temperature | 25 | 270 | < th | dose dependent | rect. | 8 | 22 |
| 12 | 119.87 | temperature | 25 | 90 | < th | dose dependent | rect. | 23 | 20 |
| 24 | 120.50 | temperature | 25 | 90 | < th | dose dependent | no | NA | NA |
| 27 | 120.65 | temperature | 25 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 30 | 120.76 | temperature | 25 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 38 | 120.99 | temperature | 25 | 90 | < th | dose dependent | rect. | 3 | 23 |
| 40 | 121.02 | temperature | 25 | 90 | < th | dose dependent | rect. | 17 | 23 |
| 43 | 121.10 | temperature | 25 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 52 | 121.25 | temperature | 30 | 90 | < th | dose dependent | sin | 7 | NA |
| 56 | 121.28 | temperature | 30 | 270 | < th | dose dependent | sin | 9 | NA |
| 82 | 121.58 | temperature | 25 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 143 | 122.55 | temperature | 10 | 90 | > th | dose dependent | sin | 8 | NA |
| 281 | 124.33 | temperature | 15 | 270 | > th | dose dependent | rect. | 21 | 13 |
| 414 | 126.11 | temperature | 25 | 90 | < th | dose dependent | rect. | 1 | 18 |
| 415 | 126.12 | temperature | 25 | 720 | < th | dose dependent | rect. | 7 | 17 |
| 530 | 127.01 | wind | 9 | 14400 | > th | dose dependent | rect. | 4 | 9 |
| 547 | 127.12 | temperature | 25 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 552 | 127.15 | temperature | 25 | 1440 | < th | dose independent | rect. | 10 | 10 |
| 555 | 127.17 | temperature | 25 | 1440 | > th | dose independent | rect. | 10 | 9 |
| 602 | 127.39 | temperature | 30 | 270 | < th | dose dependent | rect. | 21 | 10 |
| 613 | 127.43 | wind | 9 | 14400 | > th | dose independent | rect. | 3 | 10 |
| 639 | 127.52 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 3 |
| 648 | 127.55 | temperature | 25 | 1440 | < th | dose independent | rect. | 10 | 3 |
| 661 | 127.60 | temperature | 25 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 678 | 127.69 | temperature | 25 | 1440 | > th | dose independent | rect. | 10 | 4 |
| 702 | 127.77 | temperature | 25 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 771 | 128.02 | temperature | 30 | 720 | < th | dose dependent | sin | 14 | NA |
| 806 | 128.13 | temperature | 25 | 720 | < th | dose dependent | sin | 19 | NA |
| 837 | 128.21 | temperature | 25 | 1440 | < th | dose independent | rect. | 13 | 7 |
| 855 | 128.25 | wind | 9 | 14400 | < th | dose independent | rect. | 3 | 10 |
| 894 | 128.37 | temperature | 25 | 1440 | < th | dose independent | rect. | 14 | 5 |
| 919 | 128.43 | temperature | 25 | 90 | < th | dose dependent | rect. | 3 | 16 |
| 977 | 128.57 | temperature | 20 | 90 | > th | dose independent | rect. | 7 | 23 |