BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0335400 Os04g0335400|Os04g0335400
         (98 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os04g0336970                                                      202   5e-53
Os04g0335400                                                      202   5e-53
Os04g0335300                                                       69   8e-13
Os04g0336956                                                       69   9e-13

>Os04g0336970 
          Length = 98

 Score =  202 bits (513), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 98/98 (100%), Positives = 98/98 (100%)

Query: 1  MGSRDGFSDNILLDNFGYRRSNPTGIYPAYIYKGKSYSTLTKAPCLYGSTPRSTKASTTN 60
          MGSRDGFSDNILLDNFGYRRSNPTGIYPAYIYKGKSYSTLTKAPCLYGSTPRSTKASTTN
Sbjct: 1  MGSRDGFSDNILLDNFGYRRSNPTGIYPAYIYKGKSYSTLTKAPCLYGSTPRSTKASTTN 60

Query: 61 VDKETDADKLTDVKIRVDPPKLLVQAHGDQSEDQASFL 98
          VDKETDADKLTDVKIRVDPPKLLVQAHGDQSEDQASFL
Sbjct: 61 VDKETDADKLTDVKIRVDPPKLLVQAHGDQSEDQASFL 98



>Os04g0335400 
          Length = 98

 Score =  202 bits (513), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 98/98 (100%), Positives = 98/98 (100%)

Query: 1  MGSRDGFSDNILLDNFGYRRSNPTGIYPAYIYKGKSYSTLTKAPCLYGSTPRSTKASTTN 60
          MGSRDGFSDNILLDNFGYRRSNPTGIYPAYIYKGKSYSTLTKAPCLYGSTPRSTKASTTN
Sbjct: 1  MGSRDGFSDNILLDNFGYRRSNPTGIYPAYIYKGKSYSTLTKAPCLYGSTPRSTKASTTN 60

Query: 61 VDKETDADKLTDVKIRVDPPKLLVQAHGDQSEDQASFL 98
          VDKETDADKLTDVKIRVDPPKLLVQAHGDQSEDQASFL
Sbjct: 61 VDKETDADKLTDVKIRVDPPKLLVQAHGDQSEDQASFL 98



>Os04g0335300 
          Length = 122

 Score = 68.9 bits (167), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 32/34 (94%), Positives = 33/34 (97%)

Query: 63  KETDADKLTDVKIRVDPPKLLVQAHGDQSEDQAS 96
           KETDADKLTDVKIRVDPPKLLVQAHGDQSEDQ +
Sbjct: 74  KETDADKLTDVKIRVDPPKLLVQAHGDQSEDQVN 107



>Os04g0336956 
          Length = 126

 Score = 68.6 bits (166), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 32/34 (94%), Positives = 33/34 (97%)

Query: 63  KETDADKLTDVKIRVDPPKLLVQAHGDQSEDQAS 96
           KETDADKLTDVKIRVDPPKLLVQAHGDQSEDQ +
Sbjct: 78  KETDADKLTDVKIRVDPPKLLVQAHGDQSEDQVN 111



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.312    0.131    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,439,297
Number of extensions: 119357
Number of successful extensions: 250
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 250
Number of HSP's successfully gapped: 4
Length of query: 98
Length of database: 17,035,801
Length adjustment: 67
Effective length of query: 31
Effective length of database: 13,537,463
Effective search space: 419661353
Effective search space used: 419661353
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 149 (62.0 bits)