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Os04g0335400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.4 (0.0184) R2 : 0.623
β1 : -1.73 (0.0694) R2dD : 0.574 R2D : 0.293
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.02 (0.0583) R2dE : 0.281 R2E : 0.0335
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.358 (0.0399) R2dN8 : 0.0931 R2N8 : -0.0502
σ : 0.342
deviance : 53.9
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 24.3
memory length : 1191
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
43.27 0.309 11.4 -1.8 0.428 0.895 0.613 -0.422 -0.335 3.43 25.23 1232 -- --
43.34 0.307 11.3 -1.69 0.426 0.866 0.584 -- -0.32 3.47 25.12 1221 -- --
44.34 0.31 11.3 -1.74 0.433 0.859 -- -0.138 -0.318 3.07 25.31 1244 -- --
44.36 0.31 11.3 -1.71 0.428 0.867 -- -- -0.317 3.1 25.21 1245 -- --
54.32 0.343 11.3 -1.69 -- 0.931 -- 0.058 -0.305 -- 25.14 1213 -- --
69.67 0.391 11.3 -1.42 0.57 -- 0.705 -- -0.221 2.84 -- -- -- --
71.33 0.396 11.3 -1.43 0.571 -- -- -- -0.225 2.66 -- -- -- --
53.9 0.342 11.4 -1.73 -- 1.02 -- -- -0.358 -- 24.3 1191 -- --
116.33 0.502 11.3 -- 0.544 0.587 -- -- -0.0458 2.97 28 1786 -- --
90.35 0.444 11.3 -1.41 -- -- -- -- -0.21 -- -- -- -- --
125.42 0.524 11.3 -- 0.543 -- -- -- -0.0654 2.63 -- -- -- --
128.9 0.529 11.3 -- -- 0.562 -- -- -0.0453 -- 26.59 2626 -- --
142.66 0.558 11.3 -- -- -- -- -- -0.0542 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 39.35 radiation 10 14400 < th dose dependent rect. 16 14
8 39.61 radiation 40 14400 > th dose dependent rect. 14 20
9 39.64 radiation 10 14400 < th dose dependent rect. 16 9
13 39.65 radiation 10 14400 < th dose dependent rect. 16 7
15 39.66 radiation 10 14400 < th dose dependent rect. 16 3
23 39.68 radiation 40 14400 < th dose dependent rect. 17 11
35 39.71 radiation 40 14400 < th dose dependent rect. 17 8
45 39.74 radiation 30 14400 < th dose independent rect. 15 1
58 39.78 radiation 30 14400 < th dose independent rect. 15 12
60 39.78 radiation 30 14400 < th dose independent rect. 15 16
65 39.79 radiation 30 14400 < th dose independent rect. 15 10
72 39.79 radiation 1 14400 > th dose dependent rect. 17 13
75 39.80 radiation 30 14400 < th dose independent rect. 15 8
77 39.80 radiation 1 14400 > th dose independent rect. 15 15
96 39.85 radiation 1 14400 < th dose independent rect. 15 15
101 39.88 radiation 10 14400 < th dose dependent sin 14 NA
103 39.89 radiation 40 14400 > th dose dependent rect. 7 3
132 39.93 radiation 1 14400 < th dose independent rect. 5 1
137 39.94 radiation 1 14400 > th dose independent rect. 9 21
139 39.95 radiation 1 14400 > th dose independent rect. 5 1
143 39.95 radiation 1 14400 > th dose dependent rect. 17 1
163 39.99 radiation 1 14400 < th dose independent rect. 9 21
168 40.02 radiation 1 14400 > th dose independent sin 14 NA
182 40.06 radiation 1 14400 > th dose independent rect. 15 4
187 40.06 radiation 1 14400 < th dose independent rect. 22 8
202 40.07 radiation 1 14400 < th dose independent rect. 24 6
210 40.08 radiation 1 14400 < th dose independent sin 13 NA
212 40.08 radiation 1 14400 < th dose independent rect. 2 4
245 40.09 humidity 90 43200 > th dose dependent rect. 22 1
279 40.11 radiation 40 14400 > th dose dependent sin 12 NA
296 40.14 radiation 30 14400 > th dose independent rect. 15 17
335 40.20 radiation 20 14400 > th dose dependent rect. 15 17
340 40.22 radiation 1 14400 < th dose independent rect. 15 12
348 40.23 radiation 1 14400 < th dose independent rect. 15 10
351 40.23 radiation 1 14400 > th dose independent rect. 15 19
355 40.24 radiation 1 14400 < th dose independent rect. 15 4
359 40.24 radiation 1 14400 < th dose independent rect. 15 7
370 40.24 radiation 1 14400 < th dose independent rect. 15 19
393 40.27 radiation 30 14400 > th dose dependent rect. 15 1
472 40.32 humidity 90 43200 > th dose dependent rect. 18 6
516 40.35 radiation 10 14400 < th dose independent rect. 16 1
563 40.39 radiation 1 14400 > th dose independent no NA NA
565 40.39 radiation 1 14400 > th dose independent rect. 4 15
615 40.40 radiation 1 14400 < th dose independent no NA NA
616 40.40 atmosphere 1005 43200 > th dose independent rect. 16 1
628 40.40 radiation 1 14400 < th dose independent rect. 22 21
635 40.40 radiation 1 14400 < th dose independent rect. 2 23
636 40.40 radiation 1 14400 < th dose independent rect. 5 23
641 40.40 radiation 1 14400 < th dose independent rect. 24 23
655 40.41 radiation 1 14400 < th dose independent rect. 4 15
666 40.41 radiation 1 14400 < th dose independent rect. 5 18
878 40.50 humidity 90 43200 > th dose dependent rect. 9 15
927 40.55 radiation 1 14400 < th dose dependent rect. 5 1
971 40.60 temperature 25 43200 > th dose independent rect. 17 1
972 40.60 humidity 90 43200 < th dose independent rect. 21 1
990 40.61 radiation 40 14400 < th dose dependent rect. 20 10