BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0320100 Os04g0320100|AK068015
         (327 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os04g0320100  Coenzyme F420 hydrogenase/dehydrogenase beta s...   638   0.0  

>Os04g0320100 Coenzyme F420 hydrogenase/dehydrogenase beta subunit, N-terminal
           domain containing protein
          Length = 327

 Score =  638 bits (1645), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 311/327 (95%), Positives = 311/327 (95%)

Query: 1   MARCISFLSTSSSLPCATKXXXXXXXXXXXXXXXXHQCRGRKTSCGSIRALREDWRERSK 60
           MARCISFLSTSSSLPCATK                HQCRGRKTSCGSIRALREDWRERSK
Sbjct: 1   MARCISFLSTSSSLPCATKPPCCSVSSVLPSSPSSHQCRGRKTSCGSIRALREDWRERSK 60

Query: 61  AIPPGGVYPAKDHCSQCGLCDTYYIAHVKNACAFLGDGMSRVEDLEPLVHGRGRKQDMDE 120
           AIPPGGVYPAKDHCSQCGLCDTYYIAHVKNACAFLGDGMSRVEDLEPLVHGRGRKQDMDE
Sbjct: 61  AIPPGGVYPAKDHCSQCGLCDTYYIAHVKNACAFLGDGMSRVEDLEPLVHGRGRKQDMDE 120

Query: 121 MYFGVYEQLLYARKMKPVEGAQWTGIVTTIAVEMLKANMVDAVVCVQSDPDDRLAPMPVL 180
           MYFGVYEQLLYARKMKPVEGAQWTGIVTTIAVEMLKANMVDAVVCVQSDPDDRLAPMPVL
Sbjct: 121 MYFGVYEQLLYARKMKPVEGAQWTGIVTTIAVEMLKANMVDAVVCVQSDPDDRLAPMPVL 180

Query: 181 ARTPDEVIAAKGVKPTLSPNLNTLALVEAAGVKRLLFCGVGCQVQALRSVEKYLGLEKLY 240
           ARTPDEVIAAKGVKPTLSPNLNTLALVEAAGVKRLLFCGVGCQVQALRSVEKYLGLEKLY
Sbjct: 181 ARTPDEVIAAKGVKPTLSPNLNTLALVEAAGVKRLLFCGVGCQVQALRSVEKYLGLEKLY 240

Query: 241 VLGTNCVDNGTREGLDKFLKAASSEPETVLHYEFMQDYKVHLKHLDGHIEEVPYFCLPAK 300
           VLGTNCVDNGTREGLDKFLKAASSEPETVLHYEFMQDYKVHLKHLDGHIEEVPYFCLPAK
Sbjct: 241 VLGTNCVDNGTREGLDKFLKAASSEPETVLHYEFMQDYKVHLKHLDGHIEEVPYFCLPAK 300

Query: 301 DLVDVIAPSCYSCFDYTNGLAVRFPSF 327
           DLVDVIAPSCYSCFDYTNGLAVRFPSF
Sbjct: 301 DLVDVIAPSCYSCFDYTNGLAVRFPSF 327



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.322    0.137    0.427 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,239,862
Number of extensions: 469176
Number of successful extensions: 981
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 980
Number of HSP's successfully gapped: 1
Length of query: 327
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 226
Effective length of database: 11,762,187
Effective search space: 2658254262
Effective search space used: 2658254262
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 156 (64.7 bits)