BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0319600 Os04g0319600|J065180G05
         (201 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os04g0319600  SAM (and some other nucleotide) binding motif ...   362   e-100
Os04g0326300  SAM (and some other nucleotide) binding motif ...   343   6e-95

>Os04g0319600 SAM (and some other nucleotide) binding motif domain containing
           protein
          Length = 201

 Score =  362 bits (929), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 174/186 (93%), Positives = 174/186 (93%)

Query: 16  ARAVAPHGRVCTFDFHDQRAASAREDFERNGLTSIITVAVRDIQGQGFPEEHTGAADAVF 75
           ARAVAPHGRVCTFDFHDQRAASAREDFERNGLTSIITVAVRDIQGQGFPEEHTGAADAVF
Sbjct: 16  ARAVAPHGRVCTFDFHDQRAASAREDFERNGLTSIITVAVRDIQGQGFPEEHTGAADAVF 75

Query: 76  LDLPQPWLAIPSAGTMLKQDGVLCSFSPCIEQVQRACEAMRSCFTDIRTFEILLRTYEVR 135
           LDLPQPWLAIPSAGTMLKQDGVLCSFSPCIEQVQRACEAMRSCFTDIRTFEILLRTYEVR
Sbjct: 76  LDLPQPWLAIPSAGTMLKQDGVLCSFSPCIEQVQRACEAMRSCFTDIRTFEILLRTYEVR 135

Query: 136 EGGLKGATTNEESNAVPXXXXXXXXXXXXETLDVKQNSSSVMVRPCSTARGHTGYLTFAR 195
           EGGLKGATTNEESNAVP            ETLDVKQNSSSVMVRPCSTARGHTGYLTFAR
Sbjct: 136 EGGLKGATTNEESNAVPLAQKKRKLLAAAETLDVKQNSSSVMVRPCSTARGHTGYLTFAR 195

Query: 196 LRVHGN 201
           LRVHGN
Sbjct: 196 LRVHGN 201



>Os04g0326300 SAM (and some other nucleotide) binding motif domain containing
           protein
          Length = 359

 Score =  343 bits (879), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 168/182 (92%), Positives = 168/182 (92%), Gaps = 1/182 (0%)

Query: 16  ARAVAPHGRVCTFDFHDQRAASAREDFERNGLTSIITVAVRDIQGQGFPEEHTGAADAVF 75
           ARAVAPHGRVCTFDFHDQRAASAREDFERN LTSIITVAVRDIQGQGFPEEHTGAADAVF
Sbjct: 142 ARAVAPHGRVCTFDFHDQRAASAREDFERNDLTSIITVAVRDIQGQGFPEEHTGAADAVF 201

Query: 76  LDLPQPWLAIPSAGTMLKQDGVLCSFSPCIEQVQRACEAMRSCFTDIRTFEILLRTYEVR 135
           LDLPQPWLAIPSAGTMLKQDGVLCSFSPCIEQVQRACEAMRSCFTDIRTFEILLRTYEVR
Sbjct: 202 LDLPQPWLAIPSAGTMLKQDGVLCSFSPCIEQVQRACEAMRSCFTDIRTFEILLRTYEVR 261

Query: 136 EGGLKGATTNEESNAVPXXXXXXXXXXXXETLDVKQNSSSVMVRPCSTARGHTGYLTFAR 195
           EGGLKGATTNEESNAVP            ETLDVKQN SSVMVRPCSTARGHTGYLTFAR
Sbjct: 262 EGGLKGATTNEESNAVPLAQKKRKLLAAAETLDVKQN-SSVMVRPCSTARGHTGYLTFAR 320

Query: 196 LR 197
           LR
Sbjct: 321 LR 322



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.321    0.134    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,855,754
Number of extensions: 216440
Number of successful extensions: 331
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 330
Number of HSP's successfully gapped: 2
Length of query: 201
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 105
Effective length of database: 12,023,257
Effective search space: 1262441985
Effective search space used: 1262441985
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 153 (63.5 bits)