Os04g0319600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : SAM (and some other nucleotide) binding motif domain containing protein.
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Os04g0319600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : SAM (and some other nucleotide) binding motif domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 43.66 | 0.31 | 10.6 | 0.79 | 0.572 | 0.0335 | -0.423 | -3.67 | 0.287 | 18.5 | 31.5 | 4736 | -- | -- |
| 43.93 | 0.309 | 10.5 | 1.39 | 0.546 | -0.334 | -0.652 | -- | 0.376 | 18.4 | 32.03 | 5939 | -- | -- |
| 44.06 | 0.309 | 10.6 | 0.813 | 0.57 | 0.0175 | -- | -3.51 | 0.28 | 18.6 | 31.6 | 4756 | -- | -- |
| 44.04 | 0.309 | 10.5 | 1.45 | 0.542 | -0.367 | -- | -- | 0.33 | 18.5 | 31.9 | 5940 | -- | -- |
| 60.28 | 0.362 | 10.5 | 0.867 | -- | -0.0132 | -- | -3.42 | 0.293 | -- | 31.5 | 4136 | -- | -- |
| 50.92 | 0.335 | 10.5 | 1.29 | 0.565 | -- | -0.476 | -- | 0.358 | 18.3 | -- | -- | -- | -- |
| 51.42 | 0.336 | 10.5 | 1.3 | 0.563 | -- | -- | -- | 0.356 | 18.5 | -- | -- | -- | -- |
| 58.61 | 0.357 | 10.5 | 1.41 | -- | -0.402 | -- | -- | 0.287 | -- | 30.51 | 5756 | -- | -- |
| 93.9 | 0.451 | 10.5 | -- | 0.534 | -0.179 | -- | -- | 0.19 | 18.6 | 30.8 | 5767 | -- | -- |
| 67.92 | 0.385 | 10.5 | 1.28 | -- | -- | -- | -- | 0.344 | -- | -- | -- | -- | -- |
| 95.74 | 0.458 | 10.5 | -- | 0.547 | -- | -- | -- | 0.212 | 18.6 | -- | -- | -- | -- |
| 108.58 | 0.485 | 10.5 | -- | -- | -0.217 | -- | -- | 0.166 | -- | 30.75 | 5763 | -- | -- |
| 111.32 | 0.492 | 10.5 | -- | -- | -- | -- | -- | 0.202 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 37.70 | temperature | 20 | 720 | > th | dose dependent | rect. | 3 | 4 |
| 11 | 38.36 | temperature | 10 | 720 | > th | dose dependent | rect. | 2 | 7 |
| 13 | 38.53 | temperature | 20 | 720 | > th | dose dependent | rect. | 4 | 1 |
| 22 | 38.79 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 10 |
| 32 | 38.97 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 9 |
| 47 | 39.31 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 12 |
| 54 | 39.45 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 10 |
| 69 | 39.60 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 14 |
| 94 | 39.85 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 18 |
| 98 | 39.86 | temperature | 15 | 30 | > th | dose dependent | rect. | 4 | 16 |
| 104 | 39.90 | temperature | 10 | 720 | > th | dose dependent | sin | 8 | NA |
| 121 | 39.99 | temperature | 10 | 270 | > th | dose dependent | rect. | 3 | 15 |
| 123 | 40.03 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 2 |
| 148 | 40.25 | temperature | 30 | 720 | < th | dose dependent | sin | 8 | NA |
| 176 | 40.41 | temperature | 15 | 270 | > th | dose dependent | rect. | 3 | 17 |
| 182 | 40.45 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 16 |
| 201 | 40.53 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 14 |
| 289 | 40.90 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 1 |
| 376 | 41.19 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 4 |
| 454 | 41.42 | temperature | 15 | 30 | > th | dose dependent | rect. | 4 | 18 |
| 531 | 41.69 | temperature | 25 | 10 | > th | dose independent | rect. | 2 | 7 |
| 562 | 41.81 | temperature | 30 | 720 | < th | dose independent | rect. | 22 | 14 |
| 584 | 41.87 | temperature | 30 | 720 | < th | dose independent | rect. | 7 | 5 |
| 587 | 41.88 | temperature | 30 | 720 | < th | dose independent | rect. | 24 | 10 |
| 634 | 42.01 | temperature | 30 | 270 | < th | dose independent | rect. | 7 | 20 |
| 643 | 42.03 | temperature | 30 | 720 | < th | dose independent | rect. | 9 | 1 |
| 655 | 42.08 | temperature | 20 | 720 | > th | dose independent | rect. | 4 | 1 |
| 669 | 42.13 | temperature | 30 | 720 | < th | dose independent | rect. | 24 | 12 |
| 700 | 42.23 | atmosphere | 1015 | 270 | < th | dose dependent | rect. | 12 | 10 |
| 739 | 42.31 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 2 |
| 775 | 42.40 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 7 |
| 780 | 42.40 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 21 |
| 800 | 42.46 | temperature | 30 | 270 | < th | dose independent | rect. | 7 | 10 |
| 832 | 42.54 | temperature | 30 | 720 | < th | dose independent | rect. | 9 | 3 |
| 849 | 42.60 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 4 |
| 872 | 42.66 | temperature | 30 | 720 | < th | dose independent | rect. | 5 | 7 |
| 894 | 42.72 | temperature | 30 | 720 | < th | dose independent | rect. | 15 | 21 |
| 910 | 42.76 | temperature | 30 | 720 | > th | dose independent | rect. | 18 | 20 |
| 924 | 42.79 | temperature | 30 | 720 | > th | dose independent | rect. | 11 | 3 |
| 926 | 42.79 | temperature | 25 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 947 | 42.83 | temperature | 30 | 720 | > th | dose independent | rect. | 8 | 6 |
| 981 | 42.87 | temperature | 30 | 270 | < th | dose dependent | rect. | 9 | 1 |
| 996 | 42.88 | atmosphere | 995 | 30 | > th | dose dependent | rect. | 9 | 19 |