BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0298200 Os04g0298200|Os04g0298200
         (66 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os04g0298200                                                      103   2e-23
Os04g0293401                                                      102   9e-23
Os04g0195400                                                      101   1e-22
Os06g0367201                                                       97   4e-21
Os01g0376150                                                       91   2e-19
Os07g0413001                                                       87   2e-18
Os04g0195200                                                       79   7e-16
Os12g0239466                                                       68   2e-12

>Os04g0298200 
          Length = 66

 Score =  103 bits (258), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 52/66 (78%), Positives = 52/66 (78%)

Query: 1  MAKAGKPRRYXXXXXXXXXXXXXXLQRLRHDEFGIKEAQQAAPGLLGPFAIDQAQPISPL 60
          MAKAGKPRRY              LQRLRHDEFGIKEAQQAAPGLLGPFAIDQAQPISPL
Sbjct: 1  MAKAGKPRRYSESKGISGEGISGELQRLRHDEFGIKEAQQAAPGLLGPFAIDQAQPISPL 60

Query: 61 KAHMCK 66
          KAHMCK
Sbjct: 61 KAHMCK 66



>Os04g0293401 
          Length = 66

 Score =  102 bits (253), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 51/66 (77%), Positives = 51/66 (77%)

Query: 1  MAKAGKPRRYXXXXXXXXXXXXXXLQRLRHDEFGIKEAQQAAPGLLGPFAIDQAQPISPL 60
          MAKAGKPRRY              LQRLRHDEFGIKEAQQAAP LLGPFAIDQAQPISPL
Sbjct: 1  MAKAGKPRRYSESKGISGEGISGELQRLRHDEFGIKEAQQAAPSLLGPFAIDQAQPISPL 60

Query: 61 KAHMCK 66
          KAHMCK
Sbjct: 61 KAHMCK 66



>Os04g0195400 
          Length = 1344

 Score =  101 bits (251), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 50/64 (78%), Positives = 50/64 (78%)

Query: 1  MAKAGKPRRYXXXXXXXXXXXXXXLQRLRHDEFGIKEAQQAAPGLLGPFAIDQAQPISPL 60
          MAKAGKPRRY              LQRLRHDEFGIKEAQQAAPGLLGPFAIDQAQPISPL
Sbjct: 1  MAKAGKPRRYSESKGISGEGILGELQRLRHDEFGIKEAQQAAPGLLGPFAIDQAQPISPL 60

Query: 61 KAHM 64
          KAHM
Sbjct: 61 KAHM 64



>Os06g0367201 
          Length = 125

 Score = 96.7 bits (239), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 50/64 (78%), Positives = 50/64 (78%), Gaps = 5/64 (7%)

Query: 1  MAKAGKPRRYXXXXXXXXXXXXXXLQRLRHDEFGIKEAQQAAPGLLGPFAIDQAQPISPL 60
          MAKAGKPRRY              LQRLRHDEFGIKEAQQAAPGLLGPFAIDQAQPISPL
Sbjct: 1  MAKAGKPRRYSESKGISGK-----LQRLRHDEFGIKEAQQAAPGLLGPFAIDQAQPISPL 55

Query: 61 KAHM 64
          KAHM
Sbjct: 56 KAHM 59



>Os01g0376150 
          Length = 61

 Score = 90.5 bits (223), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 48/66 (72%), Positives = 48/66 (72%), Gaps = 5/66 (7%)

Query: 1  MAKAGKPRRYXXXXXXXXXXXXXXLQRLRHDEFGIKEAQQAAPGLLGPFAIDQAQPISPL 60
          MAKAGKP RY              LQRLRHDEFGIKE QQAAPGLLGPFAIDQAQPISPL
Sbjct: 1  MAKAGKPHRYSESKGISSE-----LQRLRHDEFGIKEDQQAAPGLLGPFAIDQAQPISPL 55

Query: 61 KAHMCK 66
           AHM K
Sbjct: 56 TAHMYK 61



>Os07g0413001 
          Length = 65

 Score = 87.4 bits (215), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 47/66 (71%), Positives = 48/66 (72%), Gaps = 1/66 (1%)

Query: 1  MAKAGKPRRYXXXXXXXXXXXXXXLQRLRHDEFGIKEAQQAAPGLLGPFAIDQAQPISPL 60
          MAKAGKP RY              LQRL HD+FGIKEAQQAAPGLLG FAIDQ QPISPL
Sbjct: 1  MAKAGKPHRYSESKGISGEGISGELQRLCHDKFGIKEAQQAAPGLLGLFAIDQ-QPISPL 59

Query: 61 KAHMCK 66
          KAHMCK
Sbjct: 60 KAHMCK 65



>Os04g0195200 
          Length = 285

 Score = 79.0 bits (193), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 43/59 (72%), Positives = 43/59 (72%), Gaps = 5/59 (8%)

Query: 1  MAKAGKPRRYXXXXXXXXXXXXXXLQRLRHDEFGIKEAQQAAPGLLGPFAIDQAQPISP 59
          MAKAGKPR Y              LQRLRHDEFGIKEAQQAAP LLGPFAIDQAQPISP
Sbjct: 1  MAKAGKPRWYYESKGISGE-----LQRLRHDEFGIKEAQQAAPSLLGPFAIDQAQPISP 54



>Os12g0239466 
          Length = 52

 Score = 67.8 bits (164), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 36/52 (69%), Positives = 36/52 (69%)

Query: 1  MAKAGKPRRYXXXXXXXXXXXXXXLQRLRHDEFGIKEAQQAAPGLLGPFAID 52
          MAKA KPRRY              LQRLRHDEFGIKEAQQAAP LLGPFAID
Sbjct: 1  MAKARKPRRYSECKGILGEGISGKLQRLRHDEFGIKEAQQAAPVLLGPFAID 52



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.322    0.137    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 1,747,430
Number of extensions: 40410
Number of successful extensions: 56
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 53
Number of HSP's successfully gapped: 8
Length of query: 66
Length of database: 17,035,801
Length adjustment: 38
Effective length of query: 28
Effective length of database: 15,051,669
Effective search space: 421446732
Effective search space used: 421446732
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 149 (62.0 bits)