Os04g0298200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os04g0298200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 38.98 | 0.293 | 10.4 | 0.425 | 1.54 | -0.582 | 0.0281 | 0.659 | -0.0746 | 8.04 | 19.3 | 1613 | -- | -- |
| 39.69 | 0.293 | 10.4 | 0.336 | 1.54 | -0.628 | 0.0445 | -- | -0.0902 | 8 | 19.3 | 1599 | -- | -- |
| 38.98 | 0.291 | 10.4 | 0.427 | 1.54 | -0.583 | -- | 0.662 | -0.0738 | 8.04 | 19.3 | 1625 | -- | -- |
| 39.56 | 0.293 | 10.4 | 0.351 | 1.54 | -0.707 | -- | -- | -0.0894 | 8.04 | 19.3 | 1589 | -- | -- |
| 156.49 | 0.583 | 10.4 | 0.389 | -- | -0.619 | -- | 0.593 | -0.015 | -- | 21.26 | 651 | -- | -- |
| 46.94 | 0.321 | 10.5 | 0.081 | 1.53 | -- | 0.125 | -- | -0.21 | 8.03 | -- | -- | -- | -- |
| 46.99 | 0.321 | 10.5 | 0.0845 | 1.53 | -- | -- | -- | -0.21 | 8.04 | -- | -- | -- | -- |
| 132.72 | 0.537 | 10.5 | 0.362 | -- | -0.847 | -- | -- | 0.0989 | -- | 25.8 | 616 | -- | -- |
| 42.12 | 0.302 | 10.4 | -- | 1.54 | -0.548 | -- | -- | -0.152 | 8.01 | 19.2 | 1564 | -- | -- |
| 175.8 | 0.62 | 10.5 | 0.099 | -- | -- | -- | -- | -0.191 | -- | -- | -- | -- | -- |
| 47.18 | 0.321 | 10.5 | -- | 1.53 | -- | -- | -- | -0.219 | 8.03 | -- | -- | -- | -- |
| 133.88 | 0.539 | 10.4 | -- | -- | -0.892 | -- | -- | 0.0371 | -- | 25.9 | 589 | -- | -- |
| 176.06 | 0.619 | 10.5 | -- | -- | -- | -- | -- | -0.202 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 35.29 | radiation | 20 | 90 | < th | dose dependent | rect. | 5 | 22 |
| 2 | 35.41 | temperature | 20 | 270 | > th | dose independent | rect. | 15 | 18 |
| 4 | 35.77 | radiation | 10 | 90 | < th | dose independent | rect. | 5 | 22 |
| 14 | 36.26 | radiation | 20 | 10 | < th | dose dependent | rect. | 6 | 21 |
| 16 | 36.30 | radiation | 20 | 90 | < th | dose dependent | rect. | 6 | 13 |
| 17 | 36.32 | radiation | 10 | 90 | < th | dose independent | rect. | 6 | 13 |
| 35 | 36.94 | radiation | 10 | 90 | < th | dose independent | sin | 20 | NA |
| 40 | 37.16 | radiation | 20 | 30 | < th | dose dependent | sin | 18 | NA |
| 48 | 37.19 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 3 |
| 60 | 37.30 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 62 | 37.31 | humidity | 90 | 14400 | > th | dose independent | rect. | 22 | 1 |
| 63 | 37.33 | wind | 3 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 68 | 37.35 | humidity | 90 | 14400 | > th | dose independent | rect. | 21 | 3 |
| 69 | 37.38 | humidity | 90 | 14400 | > th | dose independent | rect. | 20 | 5 |
| 71 | 37.39 | humidity | 90 | 14400 | > th | dose independent | rect. | 20 | 14 |
| 73 | 37.40 | radiation | 10 | 90 | < th | dose independent | rect. | 6 | 17 |
| 77 | 37.41 | wind | 5 | 43200 | < th | dose dependent | rect. | 24 | 6 |
| 82 | 37.43 | humidity | 90 | 14400 | > th | dose independent | rect. | 16 | 16 |
| 90 | 37.45 | humidity | 90 | 14400 | > th | dose independent | rect. | 16 | 12 |
| 97 | 37.47 | humidity | 90 | 14400 | > th | dose independent | sin | 13 | NA |
| 107 | 37.49 | humidity | 90 | 14400 | > th | dose independent | rect. | 17 | 10 |
| 114 | 37.50 | wind | 3 | 43200 | > th | dose independent | rect. | 7 | 2 |
| 131 | 37.53 | wind | 1 | 43200 | > th | dose dependent | rect. | 23 | 7 |
| 132 | 37.53 | wind | 1 | 43200 | > th | dose dependent | rect. | 1 | 8 |
| 151 | 37.55 | temperature | 20 | 90 | > th | dose independent | rect. | 5 | 22 |
| 189 | 37.59 | wind | 1 | 43200 | > th | dose dependent | rect. | 4 | 2 |
| 216 | 37.61 | wind | 1 | 43200 | > th | dose dependent | rect. | 4 | 5 |
| 226 | 37.63 | humidity | 90 | 14400 | > th | dose independent | sin | 8 | NA |
| 228 | 37.63 | wind | 3 | 43200 | < th | dose independent | rect. | 7 | 2 |
| 248 | 37.65 | radiation | 10 | 4320 | < th | dose dependent | rect. | 3 | 2 |
| 249 | 37.65 | wind | 9 | 43200 | < th | dose dependent | rect. | 3 | 5 |
| 313 | 37.72 | radiation | 20 | 43200 | < th | dose independent | rect. | 3 | 3 |
| 315 | 37.72 | temperature | 20 | 270 | > th | dose independent | rect. | 14 | 10 |
| 328 | 37.73 | wind | 5 | 43200 | < th | dose dependent | rect. | 1 | 2 |
| 355 | 37.76 | radiation | 20 | 43200 | < th | dose independent | rect. | 1 | 5 |
| 372 | 37.77 | humidity | 90 | 14400 | > th | dose dependent | rect. | 3 | 14 |
| 389 | 37.79 | humidity | 90 | 14400 | > th | dose dependent | rect. | 3 | 11 |
| 419 | 37.82 | temperature | 20 | 270 | > th | dose independent | rect. | 3 | 21 |
| 420 | 37.82 | humidity | 90 | 14400 | > th | dose dependent | sin | 3 | NA |
| 457 | 37.85 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 458 | 37.85 | wind | 1 | 43200 | > th | dose dependent | rect. | 1 | 2 |
| 490 | 37.88 | wind | 9 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 509 | 37.90 | wind | 9 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 510 | 37.90 | radiation | 20 | 43200 | < th | dose independent | rect. | 21 | 9 |
| 522 | 37.91 | radiation | 10 | 90 | > th | dose independent | sin | 20 | NA |
| 524 | 37.91 | humidity | 90 | 14400 | > th | dose independent | rect. | 5 | 23 |
| 532 | 37.92 | humidity | 90 | 14400 | > th | dose independent | no | NA | NA |
| 557 | 37.94 | humidity | 90 | 14400 | > th | dose independent | rect. | 7 | 23 |
| 566 | 37.94 | humidity | 90 | 14400 | > th | dose dependent | rect. | 22 | 20 |
| 580 | 37.96 | humidity | 90 | 14400 | < th | dose independent | rect. | 22 | 1 |
| 594 | 37.98 | humidity | 90 | 14400 | < th | dose independent | rect. | 18 | 7 |
| 620 | 38.00 | temperature | 20 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 633 | 38.01 | wind | 3 | 43200 | < th | dose independent | rect. | 4 | 2 |
| 673 | 38.03 | humidity | 90 | 14400 | > th | dose dependent | rect. | 12 | 22 |
| 681 | 38.04 | humidity | 90 | 14400 | < th | dose independent | rect. | 17 | 16 |
| 718 | 38.06 | humidity | 90 | 14400 | > th | dose independent | rect. | 2 | 23 |
| 754 | 38.08 | radiation | 20 | 90 | < th | dose dependent | rect. | 6 | 17 |
| 806 | 38.11 | humidity | 90 | 14400 | > th | dose dependent | rect. | 3 | 23 |
| 813 | 38.12 | humidity | 90 | 14400 | < th | dose independent | rect. | 21 | 14 |
| 835 | 38.13 | humidity | 90 | 14400 | > th | dose dependent | no | NA | NA |
| 844 | 38.13 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 23 |
| 845 | 38.13 | humidity | 90 | 14400 | > th | dose dependent | rect. | 15 | 23 |
| 847 | 38.14 | humidity | 90 | 14400 | < th | dose independent | sin | 13 | NA |
| 925 | 38.19 | wind | 7 | 43200 | > th | dose dependent | rect. | 10 | 1 |
| 937 | 38.20 | humidity | 90 | 14400 | > th | dose independent | rect. | 5 | 3 |