BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0284900 Os04g0284900|AK072677
         (437 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os04g0284900  Calmodulin-binding, plant family protein            590   e-169
Os02g0462200  Conserved hypothetical protein                       77   3e-14

>Os04g0284900 Calmodulin-binding, plant family protein
          Length = 437

 Score =  590 bits (1521), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 310/422 (73%), Positives = 310/422 (73%)

Query: 16  TGRCPPLPHCPAPSSDPXXXXXXXXXXXXXXXTSKKDPPSRDRAARMSPNLKRSSGIEAS 75
           TGRCPPLPHCPAPSSDP               TSKKDPPSRDRAARMSPNLKRSSGIEAS
Sbjct: 16  TGRCPPLPHCPAPSSDPAGGGGGGGGEAAAMATSKKDPPSRDRAARMSPNLKRSSGIEAS 75

Query: 76  SAAGYGPRRARSVPSSPDRKFXXXXXXXXXXXXXXDVYRPXXXXXXXXXXXXXXXXXXXX 135
           SAAGYGPRRARSVPSSPDRKF              DVYRP                    
Sbjct: 76  SAAGYGPRRARSVPSSPDRKFGAAAAAPAAASGSPDVYRPSLSAAGRSTSARSVSGSSRT 135

Query: 136 QPFPKPTLARVKSEXXXXXXXXXXXXXXXXXXXXNSLKDMXXXXXXXXXXXXXXLQKSKL 195
           QPFPKPTLARVKSE                    NSLKDM              LQKSKL
Sbjct: 136 QPFPKPTLARVKSERATTAAAASPRPPALAPPASNSLKDMARTAPSASSKAPSTLQKSKL 195

Query: 196 SPRPSPDKAVASLKPITQRSPASVTARGGRTTVVSSSRVPGNIAAKKRXXXXXXXXXXXX 255
           SPRPSPDKAVASLKPITQRSPASVTARGGRTTVVSSSRVPGNIAAKKR            
Sbjct: 196 SPRPSPDKAVASLKPITQRSPASVTARGGRTTVVSSSRVPGNIAAKKRAESANGGSASSK 255

Query: 256 XXXXXPQRAMAASATSKEEKEDEPSMQFXXXXXXXXXXXXDHLHEQLPDPVDLKPLDMSA 315
                PQRAMAASATSKEEKEDEPSMQF            DHLHEQLPDPVDLKPLDMSA
Sbjct: 256 ARSGAPQRAMAASATSKEEKEDEPSMQFEESESISTPSIEDHLHEQLPDPVDLKPLDMSA 315

Query: 316 SDSALYGQQAPSSDIPEQQSKNEEVKESFSEDKDVVVGNELHNGGQGADDIAKNITGIVK 375
           SDSALYGQQAPSSDIPEQQSKNEEVKESFSEDKDVVVGNELHNGGQGADDIAKNITGIVK
Sbjct: 316 SDSALYGQQAPSSDIPEQQSKNEEVKESFSEDKDVVVGNELHNGGQGADDIAKNITGIVK 375

Query: 376 ADDQSQLAEKEEARAKVDKVWRKDEPKSNDVIEETKSKLLEERKSRVKALVGAFETVMSF 435
           ADDQSQLAEKEEARAKVDKVWRKDEPKSNDVIEETKSKLLEERKSRVKALVGAFETVMSF
Sbjct: 376 ADDQSQLAEKEEARAKVDKVWRKDEPKSNDVIEETKSKLLEERKSRVKALVGAFETVMSF 435

Query: 436 KE 437
           KE
Sbjct: 436 KE 437



>Os02g0462200 Conserved hypothetical protein
          Length = 436

 Score = 76.6 bits (187), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 76/226 (33%), Positives = 106/226 (46%), Gaps = 17/226 (7%)

Query: 190 LQKSKLSPRPSPDK-AVASLKPITQRSPASVTARGGRTTVVSSSRVPGNIAAKKRXXXXX 248
           +QKS LS RP  DK A +S K  TQ++     A GG+T  V S R PG    K       
Sbjct: 140 MQKSNLSSRPGVDKMAASSAKQRTQKATPGALA-GGKTQAVPSVRAPGTTTKK---TMGV 195

Query: 249 XXXXXXXXXXXXPQRAMAASATSKEEKEDEPSMQFXXXXXXXXXXXXDHLHEQLPDPVDL 308
                       P R + A   +  E+E E  M+F            +HL E+LPDPV+L
Sbjct: 196 ANSVPSIQRTSIPSRPIEAPKVN--EQEVELLMEFDEMESISTPSIEEHLQERLPDPVEL 253

Query: 309 KPLDMSASDSALYGQQ--APSSDIPEQQSKNEEVKESFSEDKDVVVGNELHNGGQGAD-D 365
           K +D+ A    L+G     P+S+  +Q+ KNEEV E  SE+K  V  N   NG   AD  
Sbjct: 254 KQVDVIA--YLLFGDNPSEPASN--QQEDKNEEVVELISEEKHQVPDNNSFNGRDNADIG 309

Query: 366 IAKNITGIVKADDQSQLAEKEEARAKVDKVWRKDEPKSNDVIEETK 411
           I   +  + +A D S+L E        + V   DE + N+V+ E++
Sbjct: 310 INSKVQAVKEAIDNSELKEAANETELKEAV---DETELNEVVSESE 352



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.306    0.124    0.344 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,182,636
Number of extensions: 417971
Number of successful extensions: 1582
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1577
Number of HSP's successfully gapped: 2
Length of query: 437
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 333
Effective length of database: 11,605,545
Effective search space: 3864646485
Effective search space used: 3864646485
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 157 (65.1 bits)