Os04g0284900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Calmodulin-binding, plant family protein.
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Os04g0284900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Calmodulin-binding, plant family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 112.72 | 0.499 | 8.82 | -0.193 | 1.23 | 1.21 | 0.366 | 0.728 | -0.478 | 9.32 | 22.8 | 843 | -- | -- |
| 113.31 | 0.496 | 8.81 | -0.119 | 1.23 | 1.1 | 0.53 | -- | -0.464 | 9.29 | 22.8 | 842 | -- | -- |
| 113.15 | 0.495 | 8.83 | -0.198 | 1.23 | 1.24 | -- | 0.902 | -0.479 | 9.32 | 22.8 | 834 | -- | -- |
| 114.23 | 0.498 | 8.81 | -0.0944 | 1.24 | 1.08 | -- | -- | -0.464 | 9.33 | 22.8 | 827 | -- | -- |
| 193.14 | 0.647 | 8.86 | -0.207 | -- | 1.52 | -- | 1.16 | -0.393 | -- | 27.91 | 724 | -- | -- |
| 127.53 | 0.529 | 8.85 | -0.398 | 1.35 | -- | 0.44 | -- | -0.632 | 9.47 | -- | -- | -- | -- |
| 128.24 | 0.53 | 8.85 | -0.381 | 1.34 | -- | -- | -- | -0.631 | 9.47 | -- | -- | -- | -- |
| 193.07 | 0.647 | 8.81 | 0.0476 | -- | 1.56 | -- | -- | -0.301 | -- | 28.56 | 713 | -- | -- |
| 114.44 | 0.498 | 8.81 | -- | 1.24 | 1.13 | -- | -- | -0.448 | 9.32 | 22.8 | 843 | -- | -- |
| 234.28 | 0.715 | 8.88 | -0.39 | -- | -- | -- | -- | -0.627 | -- | -- | -- | -- | -- |
| 132.07 | 0.538 | 8.84 | -- | 1.34 | -- | -- | -- | -0.588 | 9.49 | -- | -- | -- | -- |
| 193.12 | 0.647 | 8.81 | -- | -- | 1.54 | -- | -- | -0.309 | -- | 28.6 | 713 | -- | -- |
| 238.29 | 0.721 | 8.87 | -- | -- | -- | -- | -- | -0.584 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 105.46 | wind | 9.0 | 14400 | < th | dose independent | rect. | 8 | 3 |
| 6 | 106.76 | wind | 9.0 | 14400 | > th | dose independent | rect. | 7 | 4 |
| 7 | 106.87 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 5 | 2 |
| 8 | 106.92 | wind | 9.0 | 14400 | > th | dose independent | rect. | 9 | 2 |
| 13 | 107.52 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 1 | 1 |
| 19 | 108.53 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 12 | 1 |
| 20 | 108.57 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 24 | 7 |
| 26 | 108.82 | wind | 3.0 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 27 | 108.86 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 3 | 4 |
| 34 | 109.14 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 38 | 109.22 | wind | 3.0 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 41 | 109.23 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 14 | 2 |
| 42 | 109.23 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 14 | 2 |
| 47 | 109.29 | humidity | 90.0 | 4320 | > th | dose dependent | rect. | 7 | 2 |
| 48 | 109.30 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 66 | 109.56 | wind | 1.0 | 14400 | > th | dose independent | rect. | 1 | 1 |
| 67 | 109.56 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 14 | 2 |
| 68 | 109.56 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 14 | 2 |
| 112 | 110.02 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 5 | 2 |
| 114 | 110.03 | temperature | 20.0 | 720 | > th | dose independent | rect. | 3 | 4 |
| 122 | 110.10 | wind | 3.0 | 14400 | < th | dose independent | rect. | 24 | 7 |
| 123 | 110.11 | temperature | 20.0 | 720 | > th | dose independent | rect. | 5 | 1 |
| 155 | 110.33 | temperature | 20.0 | 720 | > th | dose independent | rect. | 1 | 6 |
| 159 | 110.35 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 6 | 11 |
| 167 | 110.39 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 6 | 11 |
| 168 | 110.39 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 6 | 11 |
| 203 | 110.52 | wind | 3.0 | 14400 | < th | dose independent | rect. | 24 | 2 |
| 208 | 110.54 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 12 | 3 |
| 231 | 110.65 | wind | 3.0 | 14400 | > th | dose independent | rect. | 24 | 7 |
| 233 | 110.66 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 23 | 8 |
| 254 | 110.73 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 266 | 110.77 | wind | 3.0 | 14400 | > th | dose independent | rect. | 24 | 9 |
| 267 | 110.77 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 1 | 1 |
| 274 | 110.79 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 280 | 110.81 | wind | 3.0 | 14400 | > th | dose independent | rect. | 21 | 10 |
| 283 | 110.82 | wind | 3.0 | 14400 | < th | dose dependent | sin | 8 | NA |
| 287 | 110.84 | temperature | 20.0 | 720 | < th | dose independent | rect. | 3 | 4 |
| 289 | 110.85 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 295 | 110.86 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 296 | 110.86 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 299 | 110.86 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 313 | 110.91 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 319 | 110.92 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 346 | 111.01 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 367 | 111.05 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 9 | 1 |
| 386 | 111.10 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 9 | 6 |
| 392 | 111.11 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 5 | 12 |
| 414 | 111.17 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 3 | 6 |
| 427 | 111.21 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 20 | 2 |
| 429 | 111.21 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 433 | 111.22 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 3 | 4 |
| 439 | 111.23 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 16 | 1 |
| 453 | 111.26 | wind | 3.0 | 14400 | > th | dose independent | rect. | 3 | 4 |
| 454 | 111.26 | wind | 3.0 | 14400 | > th | dose independent | rect. | 3 | 6 |
| 464 | 111.29 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 467 | 111.30 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 496 | 111.37 | temperature | 20.0 | 720 | < th | dose independent | rect. | 1 | 6 |
| 562 | 111.57 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 10 | 5 |
| 602 | 111.65 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 1 | 16 |
| 617 | 111.70 | temperature | 20.0 | 720 | > th | dose independent | rect. | 3 | 10 |
| 660 | 111.80 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 666 | 111.81 | temperature | 20.0 | 720 | > th | dose independent | rect. | 1 | 14 |
| 669 | 111.82 | wind | 3.0 | 14400 | < th | dose independent | sin | 9 | NA |
| 675 | 111.83 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 1 | 16 |
| 676 | 111.83 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 1 | 16 |
| 682 | 111.83 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 1 | 16 |
| 719 | 111.93 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 20 | 1 |
| 724 | 111.94 | temperature | 20.0 | 720 | > th | dose independent | sin | 7 | NA |
| 731 | 111.95 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 7 | 3 |
| 750 | 111.99 | temperature | 20.0 | 720 | > th | dose independent | rect. | 1 | 12 |
| 753 | 111.99 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 7 | 15 |
| 756 | 112.00 | temperature | 20.0 | 720 | < th | dose independent | sin | 7 | NA |
| 815 | 112.08 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 846 | 112.14 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 2 | 2 |
| 863 | 112.18 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 11 | 4 |
| 880 | 112.20 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 24 | 13 |
| 885 | 112.21 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 10 | 2 |
| 942 | 112.32 | wind | 3.0 | 14400 | > th | dose independent | sin | 9 | NA |