BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0281900 Os04g0281900|AK061149
         (209 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os04g0281900  Protein of unknown function DUF588 family protein   383   e-107
Os02g0219900  Similar to Epstein-Barr nuclear antigen-1 (EBN...   119   1e-27

>Os04g0281900 Protein of unknown function DUF588 family protein
          Length = 209

 Score =  383 bits (983), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 192/209 (91%), Positives = 192/209 (91%)

Query: 1   MSKMAEEKVLAAPATVDGGMQSSGDLQXXXXXXXRVRPVETLLRAAPLGLCVAAMAIMLR 60
           MSKMAEEKVLAAPATVDGGMQSSGDLQ       RVRPVETLLRAAPLGLCVAAMAIMLR
Sbjct: 1   MSKMAEEKVLAAPATVDGGMQSSGDLQASSAAAARVRPVETLLRAAPLGLCVAAMAIMLR 60

Query: 61  NSVTNEYGTVSYSDLGGFKYLVYANGLCAAYSLASAFYIAVPRPATLSRSWVVFLLDQVF 120
           NSVTNEYGTVSYSDLGGFKYLVYANGLCAAYSLASAFYIAVPRPATLSRSWVVFLLDQVF
Sbjct: 61  NSVTNEYGTVSYSDLGGFKYLVYANGLCAAYSLASAFYIAVPRPATLSRSWVVFLLDQVF 120

Query: 121 TYLILAAGAASAELLYLAYNGDKEVTWSEACGVFGGFCRQARTSVAITFASVACXXXXXX 180
           TYLILAAGAASAELLYLAYNGDKEVTWSEACGVFGGFCRQARTSVAITFASVAC      
Sbjct: 121 TYLILAAGAASAELLYLAYNGDKEVTWSEACGVFGGFCRQARTSVAITFASVACYILLSL 180

Query: 181 XXXXRLFSAYDPPQPSLGNKGVEIAAFPR 209
               RLFSAYDPPQPSLGNKGVEIAAFPR
Sbjct: 181 ISSYRLFSAYDPPQPSLGNKGVEIAAFPR 209



>Os02g0219900 Similar to Epstein-Barr nuclear antigen-1 (EBNA-1)
          Length = 201

 Score =  119 bits (299), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 67/162 (41%), Positives = 96/162 (59%), Gaps = 5/162 (3%)

Query: 37  RPVETLLRAAPLGLCVAAMAIMLRNSVTNE-YGTVSYSDLGGFKYLVYANGLCAAYSLAS 95
           R  E  LR   + L VA++  M  N   +E YG V +SDL GF+YLV+ N + AAYS+AS
Sbjct: 26  RLAELGLRVCAVPLAVASVWEMATNKQVDETYGEVRFSDLSGFRYLVWINAITAAYSVAS 85

Query: 96  AFYIAVPRPATLSR-SWVVFLLDQVFTYLILAAGAASAELLYLAYNGDKEVTWSEACGVF 154
              I +     ++R  W++FLLDQ   YL+L + +A+AE++YLA  GD+EV+W E C  F
Sbjct: 86  ---ILLSSCRFITRFDWLIFLLDQASAYLLLTSASAAAEVVYLAREGDREVSWGEVCSYF 142

Query: 155 GGFCRQARTSVAITFASVACXXXXXXXXXXRLFSAYDPPQPS 196
           G FC  A  SVA+  A++ C          R+F+ ++PP  S
Sbjct: 143 GRFCGAATVSVALNAAALLCFMALSLISAFRVFTKFNPPSQS 184



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.322    0.134    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,494,840
Number of extensions: 220525
Number of successful extensions: 406
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 411
Number of HSP's successfully gapped: 2
Length of query: 209
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 113
Effective length of database: 12,023,257
Effective search space: 1358628041
Effective search space used: 1358628041
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 154 (63.9 bits)