BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0273100 Os04g0273100|AK110535
(211 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0273100 Similar to Transposase 335 1e-92
Os01g0392300 119 2e-27
Os01g0640066 71 5e-13
>Os04g0273100 Similar to Transposase
Length = 211
Score = 335 bits (860), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 170/211 (80%), Positives = 170/211 (80%)
Query: 1 YDACSVLIGSVYKFVTISFLSISIRLLHFVYLFKAINLRXXXXXXXXXXXXXXXXXXHLF 60
YDACSVLIGSVYKFVTISFLSISIRLLHFVYLFKAINLR HLF
Sbjct: 1 YDACSVLIGSVYKFVTISFLSISIRLLHFVYLFKAINLRIKASKIKAISSSPASSVSHLF 60
Query: 61 LSLCPSRVADHSPPIRHNPFGELKRLTQTSTVVAYQECFLALTSRIPDPLTESQQVQLFI 120
LSLCPSRVADHSPPIRHNPFGELKRLTQTSTVVAYQECFLALTSRIPDPLTESQQVQLFI
Sbjct: 61 LSLCPSRVADHSPPIRHNPFGELKRLTQTSTVVAYQECFLALTSRIPDPLTESQQVQLFI 120
Query: 121 AGLQDDISIDVELQKPDDLQDAMRLPRAYEWKANKXXXXXXXXXXXXXXXXXXXXXXXGG 180
AGLQDDISIDVELQKPDDLQDAMRLPRAYEWKANK GG
Sbjct: 121 AGLQDDISIDVELQKPDDLQDAMRLPRAYEWKANKPGAPPRRVFARAAAAITPDPPPAGG 180
Query: 181 STAADSIPRQFRRLSPAELAELRKWCSRWGG 211
STAADSIPRQFRRLSPAELAELRKWCSRWGG
Sbjct: 181 STAADSIPRQFRRLSPAELAELRKWCSRWGG 211
>Os01g0392300
Length = 519
Score = 119 bits (298), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 61/96 (63%), Positives = 72/96 (75%), Gaps = 3/96 (3%)
Query: 60 FLSLCPSRVADHSPPIRHNPFGELKRLTQTSTVVAYQECFLALTSRIPDPLTESQQVQLF 119
F LC A PPIRHNP GELKRLTQT+TV AYQ FLAL SR + LTE+QQVQL
Sbjct: 401 FKDLC---YAQFGPPIRHNPLGELKRLTQTTTVAAYQCRFLALASRTAELLTENQQVQLL 457
Query: 120 IAGLQDDISIDVELQKPDDLQDAMRLPRAYEWKANK 155
AGL++D++IDVE+ +PDDLQ+AM L RA+E KA K
Sbjct: 458 TAGLREDLAIDVEINRPDDLQEAMSLARAFERKALK 493
>Os01g0640066
Length = 334
Score = 71.2 bits (173), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 41/81 (50%), Positives = 51/81 (62%), Gaps = 1/81 (1%)
Query: 73 PPIRHNPFGELKRLTQTSTVVAYQECFLALTSRIPDPLTESQQVQLFIAGLQDDISIDVE 132
PP+ +P GEL L +T TV Y FLAL R + L+ESQQVQLF AGL + + DV
Sbjct: 199 PPMTDSPLGELTALRRTGTVENYVNSFLALACRDVE-LSESQQVQLFTAGLVNPLKTDVA 257
Query: 133 LQKPDDLQDAMRLPRAYEWKA 153
L +P L DA+ L RAYE +A
Sbjct: 258 LCRPRSLDDAIMLARAYEQRA 278
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.324 0.138 0.423
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,569,661
Number of extensions: 163293
Number of successful extensions: 538
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 535
Number of HSP's successfully gapped: 4
Length of query: 211
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 115
Effective length of database: 12,023,257
Effective search space: 1382674555
Effective search space used: 1382674555
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 154 (63.9 bits)