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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0273100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Transposase.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.18 (0.0334) R2 : 0.395
β1 : 1.41 (0.123) R2dD : 0.188 R2D : 0.0779
β2 : 0.825 (0.0831) R2dC : 0.133 R2C : 0.122
β3 : -1.15 (0.13) R2dE : 0.114 R2E : 0.0207
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.564 (0.0735) R2dN8 : 0.115 R2N8 : -0.0135
σ : 0.621
deviance : 175.45
__
_____
C
peak time of C : 20.5
E
wheather : temperature
threshold : 19.91
memory length : 7
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
170.88 0.614 4.15 1.74 0.831 -1.26 0.946 1.75 0.659 20.4 20.15 11 -- --
173.78 0.614 4.18 1.45 0.837 -1.18 0.732 -- 0.576 20.3 19.88 11 -- --
173.6 0.614 4.16 1.68 0.843 -1.26 -- 1.47 0.65 20.4 20.48 11 -- --
175.45 0.621 4.18 1.41 0.825 -1.15 -- -- 0.564 20.5 19.91 7 -- --
211.09 0.68 4.13 1.67 -- -1.34 -- 1.45 0.644 -- 19.65 7 -- --
194.04 0.653 4.23 1.19 0.943 -- 0.465 -- 0.372 22.2 -- -- -- --
194.9 0.654 4.23 1.17 0.94 -- -- -- 0.371 22.3 -- -- -- --
212.24 0.679 4.16 1.48 -- -1.51 -- -- 0.594 -- 15.3 2 -- --
223.82 0.701 4.23 -- 0.853 -0.657 -- -- 0.337 21.4 20.7 11 -- --
248.63 0.737 4.2 1.18 -- -- -- -- 0.373 -- -- -- -- --
230.93 0.711 4.26 -- 0.946 -- -- -- 0.241 22.4 -- -- -- --
264.52 0.76 4.2 -- -- -0.942 -- -- 0.371 -- 20.31 5 -- --
285.58 0.789 4.23 -- -- -- -- -- 0.242 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 161.90 wind 7 43200 > th dose dependent rect. 19 2
3 162.36 humidity 60 14400 < th dose dependent rect. 16 17
4 162.45 wind 7 43200 > th dose independent rect. 19 2
7 162.53 humidity 60 14400 < th dose dependent rect. 16 3
9 162.59 humidity 60 14400 < th dose dependent rect. 16 5
21 162.61 humidity 60 14400 < th dose independent rect. 17 2
23 162.85 wind 7 43200 < th dose independent rect. 19 2
24 162.88 humidity 60 14400 < th dose independent rect. 17 14
25 162.89 humidity 60 14400 < th dose independent rect. 17 4
36 162.90 humidity 60 14400 > th dose independent rect. 17 4
47 163.00 humidity 60 14400 > th dose independent rect. 17 11
68 163.29 humidity 50 14400 < th dose independent rect. 16 19
73 163.67 humidity 70 14400 < th dose dependent rect. 18 1
77 163.71 humidity 70 14400 < th dose independent rect. 19 13
82 163.91 humidity 50 14400 > th dose independent rect. 16 18
137 165.20 temperature 20 10 > th dose dependent rect. 20 23
166 165.38 radiation 1 4320 < th dose independent rect. 18 3
170 165.41 radiation 1 4320 < th dose independent rect. 18 5
190 165.73 radiation 1 4320 < th dose independent rect. 18 10
215 165.95 humidity 70 14400 < th dose independent rect. 19 1
254 166.47 humidity 80 10 > th dose dependent rect. 8 12
262 166.56 wind 7 43200 < th dose independent rect. 15 7
275 166.60 radiation 30 1440 < th dose dependent rect. 18 3
285 166.64 wind 7 43200 < th dose independent sin 15 NA
286 166.67 wind 7 43200 > th dose independent sin 15 NA
290 166.70 wind 5 43200 > th dose dependent rect. 15 7
291 166.71 wind 7 43200 > th dose independent rect. 15 6
303 166.84 wind 5 43200 > th dose dependent sin 16 NA
304 166.89 humidity 70 14400 > th dose independent rect. 19 13
322 166.92 wind 7 43200 > th dose independent rect. 15 11
323 166.92 wind 7 43200 < th dose independent rect. 15 11
324 166.93 wind 9 43200 > th dose dependent rect. 19 11
331 166.99 wind 7 43200 > th dose independent rect. 14 16
333 167.00 wind 7 43200 > th dose independent rect. 14 14
337 167.01 wind 7 43200 < th dose independent rect. 13 16
339 167.02 wind 7 43200 < th dose independent rect. 14 14
350 167.08 humidity 60 14400 < th dose independent sin 12 NA
357 167.09 wind 7 43200 < th dose independent rect. 12 19
375 167.13 wind 5 43200 > th dose dependent rect. 12 18
398 167.21 radiation 1 4320 > th dose independent rect. 18 1
417 167.24 wind 5 43200 > th dose dependent rect. 15 10
418 167.24 wind 5 43200 > th dose dependent rect. 12 14
443 167.32 radiation 1 43200 < th dose dependent rect. 21 3
488 167.47 wind 9 43200 < th dose independent rect. 18 12
502 167.52 wind 5 43200 > th dose independent rect. 3 18
508 167.53 wind 5 43200 < th dose independent rect. 3 19
532 167.61 radiation 1 43200 < th dose dependent rect. 21 5
554 167.66 wind 9 43200 > th dose independent rect. 18 12
563 167.68 wind 5 43200 < th dose independent rect. 24 21
599 167.73 wind 5 43200 > th dose independent rect. 24 21
601 167.73 humidity 70 14400 < th dose dependent sin 12 NA
613 167.75 wind 9 43200 < th dose dependent rect. 20 1
636 167.80 wind 5 43200 < th dose independent rect. 3 22
834 168.02 wind 5 43200 > th dose dependent rect. 3 18
835 168.03 humidity 60 14400 > th dose independent sin 13 NA
836 168.03 humidity 80 720 < th dose independent rect. 11 3
868 168.06 wind 7 43200 < th dose independent no NA NA
877 168.06 wind 7 43200 < th dose independent rect. 18 23
947 168.12 wind 7 43200 > th dose independent no NA NA
957 168.12 wind 5 43200 > th dose dependent rect. 24 21