BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0258100 Os04g0258100|Os04g0258100
(241 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0258100 457 e-129
Os03g0615000 451 e-127
Os04g0275860 448 e-126
Os05g0267764 343 7e-95
Os02g0499150 128 3e-30
Os08g0324600 114 7e-26
Os09g0266900 78 7e-15
>Os04g0258100
Length = 241
Score = 457 bits (1175), Expect = e-129, Method: Compositional matrix adjust.
Identities = 224/241 (92%), Positives = 224/241 (92%)
Query: 1 MYTPYCYCRGFTWNSTQHVLWLMLQYARFTYPPEYHILKKPIGTSQTAVMVRVSIRGRTP 60
MYTPYCYCRGFTWNSTQHVLWLMLQYARFTYPPEYHILKKPIGTSQTAVMVRVSIRGRTP
Sbjct: 1 MYTPYCYCRGFTWNSTQHVLWLMLQYARFTYPPEYHILKKPIGTSQTAVMVRVSIRGRTP 60
Query: 61 LEKDLQYTGYGWDIKSALQNCAYVAIIRLRYELPEIEEFYCYVPSLTEGAQHTTYPGLAE 120
LEKDLQYTGYGWDIKSALQNCAYVAIIRLRYELPEIEEFYCYVPSLTEGAQHTTYPGLAE
Sbjct: 61 LEKDLQYTGYGWDIKSALQNCAYVAIIRLRYELPEIEEFYCYVPSLTEGAQHTTYPGLAE 120
Query: 121 IGVGLHTPYLQLANFVRSLDMLYHSTFAELQRVRTRVATLERSIMPRYRQGHYTPEFMFG 180
IGVGLHTPYLQLANFVRSLDMLYHSTFAELQRVRTRVATLERSIMPRYRQGHYTPEFMFG
Sbjct: 121 IGVGLHTPYLQLANFVRSLDMLYHSTFAELQRVRTRVATLERSIMPRYRQGHYTPEFMFG 180
Query: 181 EDAMLAPAEDIPPPVGMYIERNPPSRVDVRXXXXXXXXXXXXXXXXXVQWYGRVFKLRMR 240
EDAMLAPAEDIPPPVGMYIERNPPSRVDVR VQWYGRVFKLRMR
Sbjct: 181 EDAMLAPAEDIPPPVGMYIERNPPSRVDVRTAYPPLGTTGPYGPPEYVQWYGRVFKLRMR 240
Query: 241 D 241
D
Sbjct: 241 D 241
>Os03g0615000
Length = 247
Score = 451 bits (1161), Expect = e-127, Method: Compositional matrix adjust.
Identities = 222/241 (92%), Positives = 222/241 (92%)
Query: 1 MYTPYCYCRGFTWNSTQHVLWLMLQYARFTYPPEYHILKKPIGTSQTAVMVRVSIRGRTP 60
MYTPYCYCRGFTWNSTQHVLWLMLQYARFTYPPEYHILKKPIGTSQTAVMVRVSIRGRTP
Sbjct: 7 MYTPYCYCRGFTWNSTQHVLWLMLQYARFTYPPEYHILKKPIGTSQTAVMVRVSIRGRTP 66
Query: 61 LEKDLQYTGYGWDIKSALQNCAYVAIIRLRYELPEIEEFYCYVPSLTEGAQHTTYPGLAE 120
LEKDLQYTGYGWDIKSALQNCAYVAIIRLRYELPEIEEFYCYVPSLTEGAQHTTYPGLAE
Sbjct: 67 LEKDLQYTGYGWDIKSALQNCAYVAIIRLRYELPEIEEFYCYVPSLTEGAQHTTYPGLAE 126
Query: 121 IGVGLHTPYLQLANFVRSLDMLYHSTFAELQRVRTRVATLERSIMPRYRQGHYTPEFMFG 180
IGVGLHTPYLQLANFVRSLDMLY STFAELQRVRT VATLERSIMPRYRQGHYTPEFMFG
Sbjct: 127 IGVGLHTPYLQLANFVRSLDMLYRSTFAELQRVRTGVATLERSIMPRYRQGHYTPEFMFG 186
Query: 181 EDAMLAPAEDIPPPVGMYIERNPPSRVDVRXXXXXXXXXXXXXXXXXVQWYGRVFKLRMR 240
EDAMLAPAEDIPPPVGMYIERNPPSRVDVR VQWYGRVFKLRMR
Sbjct: 187 EDAMLAPAEDIPPPVGMYIERNPPSRVDVRTAYPPLGTTGPYGPPEYVQWYGRVFKLRMR 246
Query: 241 D 241
D
Sbjct: 247 D 247
>Os04g0275860
Length = 248
Score = 448 bits (1153), Expect = e-126, Method: Compositional matrix adjust.
Identities = 220/241 (91%), Positives = 222/241 (92%)
Query: 1 MYTPYCYCRGFTWNSTQHVLWLMLQYARFTYPPEYHILKKPIGTSQTAVMVRVSIRGRTP 60
MYTPYCYCRGFTWNSTQHVLWLMLQYARFTYPPEYHILKKPIGTSQTAVMVRVSIRGRTP
Sbjct: 8 MYTPYCYCRGFTWNSTQHVLWLMLQYARFTYPPEYHILKKPIGTSQTAVMVRVSIRGRTP 67
Query: 61 LEKDLQYTGYGWDIKSALQNCAYVAIIRLRYELPEIEEFYCYVPSLTEGAQHTTYPGLAE 120
LEKDLQYTGYGWDIKSALQNCAYVAIIRLRYELPEIEEFYCYVPSLTEGAQHTTYPGLAE
Sbjct: 68 LEKDLQYTGYGWDIKSALQNCAYVAIIRLRYELPEIEEFYCYVPSLTEGAQHTTYPGLAE 127
Query: 121 IGVGLHTPYLQLANFVRSLDMLYHSTFAELQRVRTRVATLERSIMPRYRQGHYTPEFMFG 180
IGVGLHTPYLQLANFVRSLDMLY STFAELQRVRTRVA+LER IMPRYRQGHYTPEFMFG
Sbjct: 128 IGVGLHTPYLQLANFVRSLDMLYRSTFAELQRVRTRVASLERIIMPRYRQGHYTPEFMFG 187
Query: 181 EDAMLAPAEDIPPPVGMYIERNPPSRVDVRXXXXXXXXXXXXXXXXXVQWYGRVFKLRMR 240
EDAMLAPAEDIPPPVGMYIER+PPSRVDVR VQWYGRVFKLRMR
Sbjct: 188 EDAMLAPAEDIPPPVGMYIERSPPSRVDVRTAYPPLGTTGPYGPPEYVQWYGRVFKLRMR 247
Query: 241 D 241
D
Sbjct: 248 D 248
>Os05g0267764
Length = 192
Score = 343 bits (880), Expect = 7e-95, Method: Compositional matrix adjust.
Identities = 171/192 (89%), Positives = 172/192 (89%)
Query: 50 MVRVSIRGRTPLEKDLQYTGYGWDIKSALQNCAYVAIIRLRYELPEIEEFYCYVPSLTEG 109
MVRVSIRGRTPLEKDLQYTGYGWDIKSALQNCAYVAIIRLRYELPEIEEFYCYVPSLTEG
Sbjct: 1 MVRVSIRGRTPLEKDLQYTGYGWDIKSALQNCAYVAIIRLRYELPEIEEFYCYVPSLTEG 60
Query: 110 AQHTTYPGLAEIGVGLHTPYLQLANFVRSLDMLYHSTFAELQRVRTRVATLERSIMPRYR 169
AQHTTYPGLAEIGVGLHTPYLQLANFVRSLDMLY STFAELQRVRTRVATLERSIMPRYR
Sbjct: 61 AQHTTYPGLAEIGVGLHTPYLQLANFVRSLDMLYRSTFAELQRVRTRVATLERSIMPRYR 120
Query: 170 QGHYTPEFMFGEDAMLAPAEDIPPPVGMYIERNPPSRVDVRXXXXXXXXXXXXXXXXXVQ 229
QGHYT EFMFGEDAMLAPAEDIPPPVGMY ER+PPSRVDVR VQ
Sbjct: 121 QGHYTSEFMFGEDAMLAPAEDIPPPVGMYFERSPPSRVDVRTAYPPLGTTGPYGPPEYVQ 180
Query: 230 WYGRVFKLRMRD 241
WYGRVFKLRMRD
Sbjct: 181 WYGRVFKLRMRD 192
>Os02g0499150
Length = 306
Score = 128 bits (322), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 71/209 (33%), Positives = 106/209 (50%)
Query: 1 MYTPYCYCRGFTWNSTQHVLWLMLQYARFTYPPEYHILKKPIGTSQTAVMVRVSIRGRTP 60
++ P Y + S H+LWLMLQ+ +PPEYH +S A M + I+G
Sbjct: 42 VWQPLGYSGDYEEGSLPHILWLMLQHLGHNHPPEYHFFSLEQSSSLRAYMAELCIQGFWT 101
Query: 61 LEKDLQYTGYGWDIKSALQNCAYVAIIRLRYELPEIEEFYCYVPSLTEGAQHTTYPGLAE 120
E + + YGWD SA+ A+ AI+ R+ P ++ F+ Y P+ T A YPGL
Sbjct: 102 HESPIYFQAYGWDAPSAMHEAAFQAIVYYRHHRPGMDVFFHYFPTRTNQATTNYYPGLEG 161
Query: 121 IGVGLHTPYLQLANFVRSLDMLYHSTFAELQRVRTRVATLERSIMPRYRQGHYTPEFMFG 180
+ P L LA VR++D +T AEL R++ RV L+R I QGH+ ++G
Sbjct: 162 NMREIEIPQLFLAGLVRAMDRYLANTIAELCRLQARVVMLDRKIEQLGHQGHFDNAIIYG 221
Query: 181 EDAMLAPAEDIPPPVGMYIERNPPSRVDV 209
+ E +PPP+G+Y N +R+ V
Sbjct: 222 NHELQPLTETLPPPMGVYQNINTRARIRV 250
>Os08g0324600
Length = 480
Score = 114 bits (285), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 69/196 (35%), Positives = 98/196 (50%), Gaps = 2/196 (1%)
Query: 4 PYCYCRGFTWNSTQHVLWLMLQYARFTYPPEYHILKKPIGTSQTAVMVRVSIRGR-TPLE 62
P Y GF + Q LW M+Q+A +T P+Y + + SQ + V + + R
Sbjct: 11 PSYYSGGFVAGTMQQTLWEMMQHAGYTRQPQYTVFTRNYSASQRSYQVELVLPSRGNDRH 70
Query: 63 KDLQYTGYGWDIKSALQNCAYVAIIRLRYELPEIEEFYCYVPSLTEGAQHTTYPGLAEIG 122
D+ Y G GW A+ + AY A LR P+ Y +VPS ++ TYPGL
Sbjct: 71 HDIVY-GTGWTAVGAMNDAAYSATGFLRDTSPKCAVDYRFVPSRPGASRFATYPGLESAQ 129
Query: 123 VGLHTPYLQLANFVRSLDMLYHSTFAELQRVRTRVATLERSIMPRYRQGHYTPEFMFGED 182
+P+L+L FVRS + + EL R R R+A L+R + PR PE ++GED
Sbjct: 130 GEPPSPHLRLGYFVRSQERIIEDLMHELHRARRRIAILDREVEPRAGIWAIPPEVVYGED 189
Query: 183 AMLAPAEDIPPPVGMY 198
AML E++PPP G Y
Sbjct: 190 AMLPAEEELPPPSGYY 205
>Os09g0266900
Length = 188
Score = 77.8 bits (190), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 69/132 (52%)
Query: 78 LQNCAYVAIIRLRYELPEIEEFYCYVPSLTEGAQHTTYPGLAEIGVGLHTPYLQLANFVR 137
+Q A AI+ R+ P ++ F+ + P+ T + YPGL + TP L LA VR
Sbjct: 1 MQEAALQAIVYYRHYRPGLDGFFHFFPARTNQSSANYYPGLEGNMREIDTPGLFLAGLVR 60
Query: 138 SLDMLYHSTFAELQRVRTRVATLERSIMPRYRQGHYTPEFMFGEDAMLAPAEDIPPPVGM 197
++D T EL+R++ RV L+R I P QGH+ ++G + E +PPP+G+
Sbjct: 61 AMDRYLAKTITELRRLQARVVMLDRRIEPLGHQGHFDNAIIYGNHELQPLTETLPPPMGI 120
Query: 198 YIERNPPSRVDV 209
Y N +R+ V
Sbjct: 121 YHNINTRARMRV 132
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.325 0.140 0.448
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,257,282
Number of extensions: 325524
Number of successful extensions: 719
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 714
Number of HSP's successfully gapped: 7
Length of query: 241
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 143
Effective length of database: 11,918,829
Effective search space: 1704392547
Effective search space used: 1704392547
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 154 (63.9 bits)