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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0258100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.13 (0.0373) R2 : 0.66
β1 : -3.51 (0.137) R2dD : 0.518 R2D : 0.378
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.68 (0.117) R2dE : 0.159 R2E : 0.0898
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -3.37 (0.519) R2dD*E : 0.0314 R2D*E : -0.0191
γ1 : -0.925 (0.0807) R2dN8 : 0.135 R2N8 : -0.0332
σ : 0.696
deviance : 223.12
__
_____
C
peak time of C : --
E
wheather : atmosphere
threshold : 1004
memory length : 280
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 2.87
open length of G : 5.35

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
216.02 0.691 4.12 -3.61 0.243 1.43 2.08 -5.06 -0.929 7.09 1004 270 2.88 5.42
240.11 0.722 4.11 -3.31 0.327 1.33 -0.238 -- -0.82 5.69 1004 220 3.33 5.93
221.59 0.693 4.12 -3.53 0.255 1.47 -- -3.5 -0.905 7.19 1004 278 2.93 5.2
239.61 0.721 4.09 -3.4 0.241 1.36 -- -- -0.81 4.41 1004 229 3.2 6.17
223.12 0.696 4.13 -3.51 -- 1.68 -- -3.37 -0.925 -- 1004 280 2.87 5.35
277.79 0.781 4.05 -3.37 1.12 -- -1.01 -- -0.711 7.35 -- -- -- --
280.59 0.784 4.05 -3.39 1.12 -- -- -- -0.71 7.33 -- -- -- --
241.08 0.723 4.12 -3.38 -- 1.5 -- -- -0.853 -- 1004 237 3.08 6.07
543.82 1.09 4.03 -- 0.155 1.39 -- -- -0.473 3.76 1004 259 3.02 6
347.03 0.87 4.08 -3.37 -- -- -- -- -0.691 -- -- -- -- --
583.9 1.13 3.97 -- 1.09 -- -- -- -0.332 7.53 -- -- -- --
544.71 1.09 4.03 -- -- 1.53 -- -- -0.48 -- 1004 261 2.94 5.92
647.21 1.19 3.99 -- -- -- -- -- -0.317 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 223.88 atmosphere 1000.0 270 > th dose dependent rect. 3 5
2 225.02 atmosphere 1005.0 270 > th dose independent rect. 3 5
22 233.65 humidity 90.0 90 < th dose independent rect. 3 6
29 235.25 atmosphere 1005.0 10 > th dose independent rect. 5 5
32 235.60 atmosphere 1005.0 10 > th dose independent rect. 6 3
33 235.80 temperature 20.0 10 > th dose dependent rect. 10 19
57 238.08 atmosphere 1000.0 10 > th dose dependent rect. 6 4
66 238.93 radiation 1.0 90 > th dose independent rect. 18 15
71 239.05 humidity 60.0 270 > th dose dependent rect. 21 6
72 239.10 radiation 1.0 90 > th dose independent rect. 4 5
84 239.21 temperature 10.0 270 > th dose dependent rect. 8 19
93 239.53 atmosphere 1015.0 270 < th dose independent rect. 21 6
96 239.64 radiation 10.0 30 > th dose independent sin 10 NA
132 240.65 wind 3.0 270 < th dose dependent rect. 22 5
133 240.66 humidity 90.0 30 < th dose independent rect. 19 14
134 240.66 temperature 15.0 270 > th dose independent rect. 3 19
142 240.80 radiation 20.0 270 < th dose dependent rect. 3 19
144 240.91 radiation 1.0 90 < th dose independent rect. 23 12
146 240.94 radiation 1.0 90 < th dose independent rect. 23 8
157 241.11 wind 1.0 270 < th dose independent rect. 9 19
163 241.31 humidity 90.0 30 < th dose independent rect. 17 16
167 241.43 atmosphere 1015.0 270 < th dose independent rect. 9 18
170 241.48 temperature 10.0 270 > th dose dependent rect. 21 6
175 241.55 radiation 20.0 270 < th dose dependent rect. 4 17
188 241.84 atmosphere 995.0 90 > th dose dependent rect. 18 15
201 242.18 wind 9.0 270 < th dose dependent rect. 21 6
208 242.27 temperature 20.0 90 > th dose independent rect. 23 6
219 242.43 humidity 70.0 1440 < th dose independent rect. 16 1
220 242.46 radiation 1.0 90 < th dose dependent rect. 23 12
221 242.50 atmosphere 1015.0 30 < th dose independent rect. 23 7
223 242.52 temperature 20.0 10 > th dose independent rect. 23 7
227 242.54 radiation 1.0 90 < th dose dependent rect. 23 9
234 242.61 humidity 80.0 270 > th dose independent rect. 22 5
239 242.67 atmosphere 995.0 10 > th dose dependent rect. 6 17
243 242.73 radiation 20.0 270 < th dose independent rect. 3 19
246 242.76 temperature 10.0 10 > th dose dependent rect. 23 7
257 242.91 radiation 1.0 90 < th dose independent sin 8 NA
260 242.94 atmosphere 1015.0 90 < th dose dependent rect. 23 7
262 242.96 wind 3.0 30 < th dose dependent rect. 10 20
266 243.03 radiation 10.0 1440 < th dose dependent rect. 18 11
296 243.47 atmosphere 1015.0 270 < th dose dependent rect. 22 5
297 243.48 temperature 15.0 90 > th dose dependent rect. 6 3
301 243.60 radiation 20.0 90 < th dose independent rect. 6 17
308 243.64 radiation 30.0 90 < th dose dependent rect. 6 17
310 243.68 temperature 10.0 270 > th dose dependent rect. 4 4
319 243.73 wind 1.0 270 < th dose independent rect. 13 15
328 243.79 precipitation 0.1 270 < th dose independent rect. 3 19
329 243.79 precipitation 0.1 270 < th dose dependent rect. 3 19
331 243.80 humidity 70.0 30 > th dose dependent rect. 23 7
335 243.82 temperature 25.0 270 < th dose independent rect. 3 19
350 244.02 wind 1.0 270 < th dose independent rect. 16 12
363 244.19 atmosphere 1015.0 10 < th dose independent rect. 10 20
364 244.19 atmosphere 995.0 270 > th dose dependent rect. 16 16
369 244.22 wind 1.0 270 < th dose independent rect. 20 8
378 244.28 atmosphere 1005.0 720 < th dose independent rect. 19 8
379 244.29 humidity 90.0 30 < th dose independent sin 7 NA
380 244.29 temperature 20.0 90 > th dose independent rect. 6 3
384 244.34 radiation 10.0 30 < th dose dependent sin 9 NA
390 244.42 atmosphere 1000.0 10 > th dose dependent rect. 19 15
393 244.45 wind 3.0 30 < th dose dependent rect. 10 18
397 244.51 temperature 20.0 270 > th dose independent rect. 23 3
409 244.52 wind 3.0 270 < th dose dependent rect. 9 19
410 244.55 temperature 10.0 270 > th dose independent rect. 22 5
411 244.55 temperature 30.0 270 < th dose independent rect. 22 5
412 244.55 humidity 50.0 270 > th dose independent rect. 22 5
415 244.55 atmosphere 995.0 270 > th dose independent rect. 22 5
416 244.55 radiation 1.0 270 < th dose independent rect. 22 5
421 244.55 precipitation 0.1 270 < th dose independent rect. 22 5
424 244.55 radiation 1.0 270 < th dose dependent rect. 22 5
429 244.55 precipitation 0.1 270 < th dose dependent rect. 22 5
431 244.58 wind 9.0 270 < th dose independent rect. 22 5
453 244.65 radiation 10.0 1440 < th dose dependent rect. 18 2
501 244.83 radiation 1.0 90 > th dose independent rect. 9 9
516 244.92 atmosphere 1005.0 720 > th dose independent rect. 19 12
522 244.99 atmosphere 995.0 270 > th dose dependent rect. 3 18
535 245.06 wind 1.0 90 > th dose independent rect. 6 3
536 245.06 atmosphere 1015.0 10 < th dose dependent rect. 10 20
546 245.12 wind 9.0 270 < th dose dependent rect. 9 18
578 245.27 atmosphere 1015.0 90 < th dose dependent rect. 23 14
599 245.40 wind 9.0 270 < th dose independent rect. 9 18
618 245.54 atmosphere 995.0 270 > th dose independent rect. 3 19
621 245.54 wind 9.0 30 < th dose dependent rect. 10 20
632 245.59 atmosphere 1015.0 90 < th dose dependent rect. 23 16
638 245.62 humidity 70.0 1440 > th dose independent rect. 16 1
642 245.65 wind 1.0 270 > th dose independent rect. 17 14
644 245.66 precipitation 0.1 270 < th dose independent rect. 3 6
646 245.66 precipitation 0.1 270 < th dose dependent rect. 3 6
668 245.69 radiation 30.0 270 < th dose independent rect. 3 6
669 245.69 precipitation 0.1 270 < th dose independent rect. 17 15
671 245.69 precipitation 0.1 270 < th dose dependent rect. 17 15
674 245.71 wind 9.0 270 < th dose independent rect. 8 9
679 245.74 temperature 15.0 90 > th dose independent rect. 6 17
680 245.74 humidity 50.0 270 > th dose independent rect. 3 18
682 245.76 temperature 30.0 30 < th dose independent rect. 6 17
690 245.81 humidity 50.0 270 > th dose independent rect. 17 15
703 245.86 radiation 40.0 270 < th dose dependent rect. 3 6
708 245.89 radiation 40.0 270 < th dose independent rect. 3 19
740 246.07 wind 7.0 270 < th dose independent rect. 3 6
751 246.13 temperature 30.0 270 < th dose independent rect. 3 6
770 246.21 wind 1.0 270 > th dose independent rect. 3 5
776 246.24 atmosphere 995.0 270 > th dose independent rect. 17 15
783 246.27 wind 9.0 270 < th dose independent rect. 8 20
790 246.32 wind 9.0 30 < th dose dependent rect. 23 7
796 246.35 temperature 10.0 270 > th dose independent rect. 3 6
798 246.35 humidity 50.0 270 > th dose independent rect. 3 6
799 246.35 atmosphere 995.0 270 > th dose independent rect. 3 6
800 246.35 atmosphere 1015.0 270 < th dose independent rect. 3 6
801 246.35 temperature 10.0 270 > th dose independent rect. 9 18
818 246.44 humidity 90.0 10 < th dose dependent rect. 19 14
824 246.48 radiation 40.0 270 < th dose independent rect. 17 15
840 246.57 temperature 10.0 270 > th dose independent rect. 8 9
841 246.57 atmosphere 1015.0 270 < th dose independent rect. 8 9
842 246.57 temperature 10.0 270 > th dose independent rect. 17 15
847 246.59 wind 3.0 30 < th dose independent rect. 23 7
888 246.73 precipitation 0.1 90 < th dose independent rect. 6 3
891 246.73 precipitation 0.1 90 < th dose dependent rect. 6 3
895 246.75 precipitation 0.1 270 < th dose independent rect. 9 18
897 246.75 precipitation 0.1 270 < th dose dependent rect. 9 18
898 246.76 wind 9.0 90 < th dose independent rect. 6 3
899 246.76 temperature 10.0 90 > th dose independent rect. 6 3
901 246.76 humidity 50.0 90 > th dose independent rect. 6 3
902 246.76 atmosphere 995.0 90 > th dose independent rect. 6 3
903 246.76 atmosphere 1015.0 90 < th dose independent rect. 6 3
906 246.76 temperature 10.0 90 > th dose independent rect. 9 21
909 246.77 precipitation 0.1 270 < th dose independent rect. 8 9
910 246.77 precipitation 0.1 270 < th dose dependent rect. 8 9
922 246.81 wind 9.0 270 < th dose independent rect. 3 19
957 246.91 wind 3.0 90 < th dose dependent rect. 16 12
964 246.94 radiation 40.0 270 < th dose independent rect. 4 4
967 246.95 temperature 30.0 90 < th dose independent rect. 6 3
972 246.97 temperature 10.0 270 > th dose independent rect. 4 4
974 246.97 temperature 30.0 270 < th dose independent rect. 4 4
975 246.97 humidity 50.0 270 > th dose independent rect. 4 4
977 246.97 atmosphere 995.0 270 > th dose independent rect. 4 4
978 246.97 atmosphere 1015.0 270 < th dose independent rect. 4 4