BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0243700 Os04g0243700|AK059146
(115 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0243700 Zinc finger, RING-type domain containing protein 237 1e-63
Os10g0438800 Similar to RING-H2 finger protein ATL2E 84 3e-17
Os06g0540400 Zinc finger, RING-type domain containing protein 67 2e-12
Os06g0539800 65 9e-12
Os06g0536100 65 1e-11
Os06g0155200 65 1e-11
Os06g0537300 64 2e-11
Os06g0536600 63 6e-11
>Os04g0243700 Zinc finger, RING-type domain containing protein
Length = 115
Score = 237 bits (605), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 115/115 (100%), Positives = 115/115 (100%)
Query: 1 MSYLLSYISKMLCIKIPSEARQASEDGGSGGLTECSVCLSRIRVGEATRRLPCRHAFHRD 60
MSYLLSYISKMLCIKIPSEARQASEDGGSGGLTECSVCLSRIRVGEATRRLPCRHAFHRD
Sbjct: 1 MSYLLSYISKMLCIKIPSEARQASEDGGSGGLTECSVCLSRIRVGEATRRLPCRHAFHRD 60
Query: 61 CVDRWLLSCRRTCPLCRVYVVVDGNKPGVAAKHTGEPPLAEDMVIWFSAMLVPGF 115
CVDRWLLSCRRTCPLCRVYVVVDGNKPGVAAKHTGEPPLAEDMVIWFSAMLVPGF
Sbjct: 61 CVDRWLLSCRRTCPLCRVYVVVDGNKPGVAAKHTGEPPLAEDMVIWFSAMLVPGF 115
>Os10g0438800 Similar to RING-H2 finger protein ATL2E
Length = 133
Score = 83.6 bits (205), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 47/83 (56%), Positives = 54/83 (65%), Gaps = 4/83 (4%)
Query: 35 CSVCLSRIRVGEATRRLPCRHAFHRDCVDRWL-LSC-RRTCPLCRVYVVVDGNKPGVAAK 92
C VC+S R GE RRLPC HAFHRDCVDRWL L C RRTCPLCR++V A
Sbjct: 53 CCVCISGFRDGEEVRRLPCGHAFHRDCVDRWLALYCRRRTCPLCRLHVGG--AVVAAAVA 110
Query: 93 HTGEPPLAEDMVIWFSAMLVPGF 115
E L +D+VIWFS++ V GF
Sbjct: 111 GLDELQLGDDLVIWFSSLFVAGF 133
>Os06g0540400 Zinc finger, RING-type domain containing protein
Length = 168
Score = 67.4 bits (163), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/82 (48%), Positives = 47/82 (57%), Gaps = 7/82 (8%)
Query: 15 KIPSEARQASEDGGSGGLTECSVCLSRIRVGEATRRLP-CRHAFHRDCVDRWLLSCRRTC 73
KIP A S GG G +CSVCL +R GE RRLP C+H +H +C+D WL S TC
Sbjct: 85 KIPEFAYTGSASGGEGA-AQCSVCLGAVRGGEMVRRLPACKHLYHVECIDMWLAS-HATC 142
Query: 74 PLCRVYVVV----DGNKPGVAA 91
PLCR V DG +P AA
Sbjct: 143 PLCRTEVEPPPGDDGGRPAPAA 164
>Os06g0539800
Length = 167
Score = 65.5 bits (158), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 36/67 (53%), Positives = 42/67 (62%), Gaps = 4/67 (5%)
Query: 15 KIPSEARQASEDGGSGGLTECSVCLSRIRVGEATRRLP-CRHAFHRDCVDRWLLSCRRTC 73
KIP A S G GG ECSVCL ++ GEA RRLP C+H +H +C+D WL S TC
Sbjct: 77 KIPEFAYAGSARHGGGG--ECSVCLGAVQGGEAVRRLPACKHLYHVECIDMWLAS-HATC 133
Query: 74 PLCRVYV 80
PLCR V
Sbjct: 134 PLCRTEV 140
>Os06g0536100
Length = 190
Score = 65.1 bits (157), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/60 (56%), Positives = 41/60 (68%), Gaps = 6/60 (10%)
Query: 23 ASEDGG----SGGLTECSVCLSRIRVGEATRRLP-CRHAFHRDCVDRWLLSCRRTCPLCR 77
+S+DGG SG EC+VCL +R GE RRLP C H +H DC+DRWL + RTCPLCR
Sbjct: 103 SSDDGGATAASGVGRECAVCLGAVREGEMVRRLPACEHVYHADCIDRWLAA-HRTCPLCR 161
>Os06g0155200
Length = 221
Score = 64.7 bits (156), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 21 RQASEDGGSGGLTECSVCLSRIRVGEATRRLP-CRHAFHRDCVDRWLLSCRRTCPLCRVY 79
++ +GG +CS+CL RVGEA RRLP C H FH CVD WL + TCPLCR
Sbjct: 151 KREQTAAAAGGWAQCSICLGLARVGEAVRRLPSCGHLFHAGCVDEWLRA-HATCPLCRAA 209
Query: 80 VVVDGNKP 87
V G +P
Sbjct: 210 VCAAGPEP 217
>Os06g0537300
Length = 174
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/88 (44%), Positives = 49/88 (55%), Gaps = 8/88 (9%)
Query: 12 LCIKIPSEARQASEDGGSGGLTECSVCLSRIRVGEATRRLP-CRHAFHRDCVDRWLLSCR 70
+ KIP A S G GG ECSVCL ++ GEA RRLP C+H +H +C+D WL S
Sbjct: 81 VAAKIPEFAYAGSARHGGGG--ECSVCLGAVQGGEAVRRLPACKHLYHVECIDMWLAS-H 137
Query: 71 RTCPLCRVYVVV----DGNKPGVAAKHT 94
TCP+CR V D +P AA +
Sbjct: 138 ATCPICRTEVEPPPEDDDGRPAPAADES 165
>Os06g0536600
Length = 239
Score = 62.8 bits (151), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 30/55 (54%), Positives = 36/55 (65%), Gaps = 2/55 (3%)
Query: 34 ECSVCLSRIRVGEATRRLP-CRHAFHRDCVDRWLLSCRRTCPLCRVYVVVDGNKP 87
EC+VCL +R GE RRLP C H +H DC+DRW L+ RTCPLCR + N P
Sbjct: 181 ECAVCLGAVREGEMVRRLPACEHVYHADCIDRW-LAAHRTCPLCRRELDPGKNPP 234
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.326 0.139 0.461
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,781,274
Number of extensions: 198187
Number of successful extensions: 1283
Number of sequences better than 1.0e-10: 38
Number of HSP's gapped: 1385
Number of HSP's successfully gapped: 39
Length of query: 115
Length of database: 17,035,801
Length adjustment: 82
Effective length of query: 33
Effective length of database: 12,754,253
Effective search space: 420890349
Effective search space used: 420890349
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 149 (62.0 bits)