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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0243700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Zinc finger, RING-type domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.41 (0.0427) R2 : 0.328
β1 : -1.08 (0.175) R2dD : 0.0742 R2D : 0.164
β2 : -- (--) R2dC : -- R2C : --
β3 : 2.56 (0.279) R2dE : 0.161 R2E : 0.255
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.047 (0.0933) R2dN8 : 0.000532 R2N8 : 0.00051
σ : 0.793
deviance : 289.85
__
_____
C
peak time of C : --
E
wheather : radiation
threshold : 40.63
memory length : 7684
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 7.04
open length of G : 0.95

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
286.18 0.795 3.35 -1.16 0.0798 1.4 1.02 -3.13 -0.0331 5.35 40.51 8875 7 0.946
286.87 0.789 3.4 -1.09 0.0793 2.56 1.02 -- -0.0443 5.39 40.42 7754 7.03 0.943
288.75 0.791 3.35 -1.16 0.0867 1.4 -- -3.13 -0.038 4.63 40.39 8888 7 0.935
289.44 0.792 3.4 -1.08 0.0876 2.56 -- -- -0.0493 4.58 40.42 7738 7.04 0.948
289.15 0.792 3.35 -1.15 -- 1.4 -- -3.13 -0.036 -- 40.49 8887 7 0.94
340.72 0.865 3.45 -1.83 0.0802 -- 1 -- -0.252 5.55 -- -- -- --
343.18 0.868 3.45 -1.82 0.0875 -- -- -- -0.257 4.8 -- -- -- --
289.85 0.793 3.41 -1.08 -- 2.56 -- -- -0.047 -- 40.63 7684 7.04 0.95
302.05 0.809 3.36 -- 0.114 2.97 -- -- 0.164 4.51 39.51 6633 7.07 0.865
343.59 0.866 3.45 -1.82 -- -- -- -- -0.255 -- -- -- -- --
430.85 0.971 3.41 -- 0.0561 -- -- -- -0.0537 5.77 -- -- -- --
302.73 0.81 3.36 -- -- 2.98 -- -- 0.165 -- 39.53 6654 7.07 0.867
431.02 0.969 3.41 -- -- -- -- -- -0.0526 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 289.94 wind 3.0 4320 > th dose independent rect. 8 1
2 290.32 radiation 40.0 4320 > th dose independent rect. 7 1
18 290.32 radiation 40.0 4320 > th dose dependent rect. 7 1
34 291.47 temperature 20.0 4320 < th dose independent rect. 16 1
35 291.48 temperature 20.0 4320 > th dose independent rect. 16 1
37 291.79 wind 3.0 4320 < th dose independent rect. 8 1
39 292.67 wind 9.0 14400 > th dose dependent rect. 23 1
40 292.75 wind 9.0 14400 > th dose independent rect. 23 2
43 292.90 wind 5.0 4320 < th dose dependent rect. 8 1
44 292.97 wind 3.0 4320 < th dose independent rect. 5 4
47 293.25 wind 9.0 14400 < th dose independent rect. 23 1
52 294.12 humidity 90.0 720 > th dose independent rect. 5 1
53 294.18 wind 1.0 4320 > th dose dependent rect. 8 1
74 296.68 humidity 90.0 14400 > th dose dependent rect. 12 1
75 296.74 humidity 90.0 4320 > th dose dependent rect. 12 6
101 298.67 humidity 90.0 1440 < th dose independent rect. 5 1
147 299.43 humidity 90.0 1440 < th dose dependent rect. 5 1
178 300.83 humidity 90.0 4320 > th dose independent rect. 15 2
197 301.54 precipitation 0.1 14400 < th dose independent rect. 13 1
198 301.54 precipitation 0.1 14400 < th dose dependent rect. 13 1
203 301.84 wind 5.0 14400 < th dose dependent rect. 22 1
208 301.94 humidity 90.0 4320 > th dose independent rect. 12 5
238 302.64 precipitation 0.1 14400 > th dose independent rect. 13 1
242 302.70 temperature 15.0 4320 < th dose independent rect. 3 2
262 303.05 temperature 20.0 4320 > th dose independent rect. 19 1
263 303.05 humidity 80.0 1440 > th dose dependent rect. 5 1
280 303.38 wind 1.0 14400 > th dose dependent rect. 22 1
286 303.46 temperature 20.0 4320 < th dose dependent rect. 17 1
294 303.63 humidity 80.0 1440 > th dose dependent rect. 3 3
312 303.81 wind 3.0 14400 < th dose independent rect. 22 22
323 303.94 wind 9.0 14400 < th dose independent rect. 23 4
335 304.09 temperature 20.0 4320 < th dose independent rect. 19 1
337 304.11 wind 3.0 14400 < th dose dependent rect. 13 1
346 304.22 wind 3.0 14400 > th dose independent rect. 22 22
357 304.34 wind 3.0 14400 < th dose independent rect. 13 22
359 304.34 wind 3.0 14400 < th dose dependent rect. 22 22
366 304.40 wind 3.0 14400 < th dose independent rect. 17 18
373 304.51 wind 3.0 14400 > th dose independent rect. 17 18
374 304.51 wind 3.0 14400 > th dose independent rect. 14 21
378 304.54 wind 3.0 14400 < th dose independent rect. 22 1
382 304.57 wind 3.0 14400 < th dose independent rect. 22 18
386 304.58 precipitation 0.1 4320 < th dose independent rect. 24 5
388 304.58 precipitation 0.1 4320 < th dose dependent rect. 24 5
398 304.62 wind 3.0 14400 < th dose dependent rect. 13 21
399 304.63 wind 3.0 14400 > th dose independent rect. 22 1
410 304.67 wind 3.0 14400 < th dose independent rect. 17 21
434 304.80 humidity 90.0 14400 > th dose independent rect. 12 1
440 304.81 wind 3.0 14400 < th dose dependent rect. 1 19
448 304.87 wind 3.0 14400 < th dose dependent rect. 5 22
452 304.88 wind 3.0 14400 < th dose independent rect. 4 23
465 304.92 wind 3.0 14400 > th dose independent rect. 22 18
468 304.92 wind 3.0 14400 < th dose independent rect. 6 23
482 304.97 wind 3.0 14400 < th dose independent sin 3 NA
485 304.98 wind 3.0 14400 < th dose independent no NA NA
486 304.98 wind 3.0 14400 > th dose independent rect. 17 10
490 304.99 wind 3.0 14400 < th dose independent rect. 17 10
497 305.00 wind 3.0 14400 < th dose independent rect. 1 23
504 305.04 radiation 30.0 4320 > th dose dependent rect. 16 1
540 305.10 precipitation 0.1 4320 < th dose independent rect. 23 8
543 305.10 precipitation 0.1 4320 < th dose dependent rect. 23 8
545 305.11 wind 3.0 14400 < th dose dependent rect. 13 15
558 305.16 wind 3.0 14400 < th dose independent rect. 1 15
566 305.17 wind 3.0 14400 < th dose dependent rect. 1 23
598 305.26 wind 3.0 14400 > th dose independent rect. 4 23
620 305.32 wind 3.0 14400 < th dose dependent no NA NA
621 305.32 wind 3.0 14400 < th dose dependent rect. 22 4
624 305.33 wind 3.0 14400 > th dose independent sin 3 NA
631 305.34 wind 3.0 14400 > th dose independent no NA NA
651 305.37 wind 3.0 14400 > th dose independent rect. 1 23
667 305.40 wind 3.0 14400 < th dose dependent rect. 15 23
678 305.43 precipitation 0.1 4320 > th dose independent rect. 23 8
680 305.43 wind 3.0 14400 < th dose dependent rect. 17 23
682 305.45 radiation 40.0 4320 < th dose independent rect. 6 2
715 305.53 precipitation 0.1 4320 > th dose independent rect. 1 1
716 305.53 precipitation 0.1 4320 > th dose independent rect. 24 5
717 305.53 precipitation 0.1 4320 > th dose dependent rect. 1 1
723 305.54 wind 3.0 14400 > th dose independent rect. 1 15
735 305.56 wind 3.0 14400 < th dose dependent sin 14 NA
750 305.60 wind 3.0 14400 < th dose dependent rect. 5 14
811 305.70 precipitation 0.1 4320 > th dose dependent rect. 24 5
818 305.72 wind 3.0 14400 < th dose independent sin 14 NA
820 305.72 radiation 40.0 4320 < th dose independent rect. 24 8
835 305.75 precipitation 0.1 4320 > th dose dependent rect. 23 8
870 305.85 wind 1.0 14400 > th dose independent rect. 24 3
901 305.90 humidity 90.0 4320 < th dose independent rect. 16 1
905 305.91 wind 3.0 14400 > th dose independent sin 14 NA
919 305.94 humidity 90.0 14400 < th dose independent rect. 4 1
937 305.98 precipitation 0.1 4320 < th dose independent rect. 1 1
939 305.98 precipitation 0.1 4320 < th dose dependent rect. 1 1
955 306.03 wind 3.0 14400 < th dose independent rect. 13 16
965 306.05 wind 3.0 14400 < th dose independent rect. 4 11
990 306.09 wind 1.0 14400 > th dose independent rect. 13 15