BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0218600 Os04g0218600|AK103472
         (852 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os04g0218600  Conserved hypothetical protein                     1543   0.0  

>Os04g0218600 Conserved hypothetical protein
          Length = 852

 Score = 1543 bits (3995), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 767/852 (90%), Positives = 767/852 (90%)

Query: 1   MRGNPIAIFFIQLIGIPIPGLEPDLQPLVNYLLPHITAHKQSSQNIHLQLLKDIASRLPP 60
           MRGNPIAIFFIQLIGIPIPGLEPDLQPLVNYLLPHITAHKQSSQNIHLQLLKDIASRLPP
Sbjct: 1   MRGNPIAIFFIQLIGIPIPGLEPDLQPLVNYLLPHITAHKQSSQNIHLQLLKDIASRLPP 60

Query: 61  FLPQIEADLASVTDTPDSSVHFLALLAGPFYPILQLTNERDFTXXXXXXXXXXXXXXXXX 120
           FLPQIEADLASVTDTPDSSVHFLALLAGPFYPILQLTNERDFT                 
Sbjct: 61  FLPQIEADLASVTDTPDSSVHFLALLAGPFYPILQLTNERDFTKSLISSADSDALKSSLA 120

Query: 121 XTPTVSSNFEAQXXXXXXXXXVQPACFLAFRSETAVLLLRKAHRDRALGIVCLKASKVLQ 180
            TPTVSSNFEAQ         VQPACFLAFRSETAVLLLRKAHRDRALGIVCLKASKVLQ
Sbjct: 121 STPTVSSNFEAQPRRSRSPSSVQPACFLAFRSETAVLLLRKAHRDRALGIVCLKASKVLQ 180

Query: 181 XXXXXXXXXXXASDQVLCTDYSSLFGDEFSLSENRFDASILNILDIAAVEEGILHILYAA 240
                      ASDQVLCTDYSSLFGDEFSLSENRFDASILNILDIAAVEEGILHILYAA
Sbjct: 181 ELLEPDPLLDDASDQVLCTDYSSLFGDEFSLSENRFDASILNILDIAAVEEGILHILYAA 240

Query: 241 SSQPLLCCKLAEKGSDMWXXXXXXXXXXXXXXXXXXXGSTEQIDGCLSQWNHPNVHKALS 300
           SSQPLLCCKLAEKGSDMW                   GSTEQIDGCLSQWNHPNVHKALS
Sbjct: 241 SSQPLLCCKLAEKGSDMWSVLPLVQALLPALRPPLSPGSTEQIDGCLSQWNHPNVHKALS 300

Query: 301 QIATMSMSSSVLHPLLRACAGYLSSYLSSHAKAACVLLDLCRGPLSPWVPMITAKVDLAI 360
           QIATMSMSSSVLHPLLRACAGYLSSYLSSHAKAACVLLDLCRGPLSPWVPMITAKVDLAI
Sbjct: 301 QIATMSMSSSVLHPLLRACAGYLSSYLSSHAKAACVLLDLCRGPLSPWVPMITAKVDLAI 360

Query: 361 ELLEDLLGIIQGVGQSLTRSRAALKYIALAISGHMDDVLTEYKDVKHKLLFILEMLDPFI 420
           ELLEDLLGIIQGVGQSLTRSRAALKYIALAISGHMDDVLTEYKDVKHKLLFILEMLDPFI
Sbjct: 361 ELLEDLLGIIQGVGQSLTRSRAALKYIALAISGHMDDVLTEYKDVKHKLLFILEMLDPFI 420

Query: 421 DPSVSVMTDAMAFGDVSVVHLEKQASACNISLNIIRTAVKRPAVLPSLELEWRRGAVATS 480
           DPSVSVMTDAMAFGDVSVVHLEKQASACNISLNIIRTAVKRPAVLPSLELEWRRGAVATS
Sbjct: 421 DPSVSVMTDAMAFGDVSVVHLEKQASACNISLNIIRTAVKRPAVLPSLELEWRRGAVATS 480

Query: 481 VILSTLDPHMPLPPDIDLCKSSMPEIDQISLIVPNCPPHSCSAEDADGRDTSETTPRADI 540
           VILSTLDPHMPLPPDIDLCKSSMPEIDQISLIVPNCPPHSCSAEDADGRDTSETTPRADI
Sbjct: 481 VILSTLDPHMPLPPDIDLCKSSMPEIDQISLIVPNCPPHSCSAEDADGRDTSETTPRADI 540

Query: 541 LEQCNSLFAPXXXXXXXXXXXXXXXXXXXISTDLDQNFPEDTKSNGKLPAGLFQLDNIFA 600
           LEQCNSLFAP                   ISTDLDQNFPEDTKSNGKLPAGLFQLDNIFA
Sbjct: 541 LEQCNSLFAPEELEQSELTKTLEEKKHEKISTDLDQNFPEDTKSNGKLPAGLFQLDNIFA 600

Query: 601 TDYYDAHADYLQLVNYQDCELRALEFQRLALNLCTQQEPTVEGHNAGIDAFLLAAECYVN 660
           TDYYDAHADYLQLVNYQDCELRALEFQRLALNLCTQQEPTVEGHNAGIDAFLLAAECYVN
Sbjct: 601 TDYYDAHADYLQLVNYQDCELRALEFQRLALNLCTQQEPTVEGHNAGIDAFLLAAECYVN 660

Query: 661 PLFLLDFHSNSESLDEIERIHAELIQGNCFSEAKHLRAKDIDLMKIYNLENKRDKAVLDL 720
           PLFLLDFHSNSESLDEIERIHAELIQGNCFSEAKHLRAKDIDLMKIYNLENKRDKAVLDL
Sbjct: 661 PLFLLDFHSNSESLDEIERIHAELIQGNCFSEAKHLRAKDIDLMKIYNLENKRDKAVLDL 720

Query: 721 LMQAARYDFEYQGKIPDGKPFPDDVEDGKQYIEISPEARHLADAVTLVRKNQAMLCHFIM 780
           LMQAARYDFEYQGKIPDGKPFPDDVEDGKQYIEISPEARHLADAVTLVRKNQAMLCHFIM
Sbjct: 721 LMQAARYDFEYQGKIPDGKPFPDDVEDGKQYIEISPEARHLADAVTLVRKNQAMLCHFIM 780

Query: 781 KQFEKKGHSPNEIXXXXXXXXXHSATDLFCPPENVIDIILKSAEDLNGKLVCLYNSVNAR 840
           KQFEKKGHSPNEI         HSATDLFCPPENVIDIILKSAEDLNGKLVCLYNSVNAR
Sbjct: 781 KQFEKKGHSPNEILLQSLLFLLHSATDLFCPPENVIDIILKSAEDLNGKLVCLYNSVNAR 840

Query: 841 NNKLDRIKLHYL 852
           NNKLDRIKLHYL
Sbjct: 841 NNKLDRIKLHYL 852



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.321    0.136    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 25,345,050
Number of extensions: 952829
Number of successful extensions: 2133
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 2130
Number of HSP's successfully gapped: 1
Length of query: 852
Length of database: 17,035,801
Length adjustment: 109
Effective length of query: 743
Effective length of database: 11,344,475
Effective search space: 8428944925
Effective search space used: 8428944925
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 160 (66.2 bits)