Os04g0218600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0218600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 148.14 | 0.572 | 3.82 | 1.03 | 0.0554 | 1.17 | -0.929 | -0.274 | -0.0656 | 18.9 | 23.8 | 569 | -- | -- |
| 148.16 | 0.567 | 3.82 | 0.991 | 0.0569 | 1.24 | -0.898 | -- | -0.0811 | 18.8 | 23.46 | 550 | -- | -- |
| 149.93 | 0.57 | 3.83 | 0.944 | 0.0645 | 1.31 | -- | 0.363 | -0.0996 | 20.2 | 23.27 | 556 | -- | -- |
| 150.03 | 0.57 | 3.82 | 1 | 0.0639 | 1.25 | -- | -- | -0.0793 | 20.2 | 23.42 | 564 | -- | -- |
| 150.16 | 0.571 | 3.83 | 0.955 | -- | 1.27 | -- | 0.292 | -0.1 | -- | 23.28 | 550 | -- | -- |
| 168.37 | 0.608 | 3.87 | 0.672 | 0.0517 | -- | 0.829 | -- | -0.29 | 6.63 | -- | -- | -- | -- |
| 170.08 | 0.611 | 3.87 | 0.685 | 0.0562 | -- | -- | -- | -0.292 | 7.62 | -- | -- | -- | -- |
| 150.25 | 0.571 | 3.82 | 0.996 | -- | 1.22 | -- | -- | -0.0897 | -- | 23.41 | 553 | -- | -- |
| 173.36 | 0.613 | 3.86 | -- | 0.00636 | 0.777 | -- | -- | -0.256 | 19.5 | 23.6 | 530 | -- | -- |
| 170.25 | 0.61 | 3.87 | 0.686 | -- | -- | -- | -- | -0.291 | -- | -- | -- | -- | -- |
| 182.46 | 0.632 | 3.89 | -- | 0.063 | -- | -- | -- | -0.368 | 6.87 | -- | -- | -- | -- |
| 173.37 | 0.613 | 3.86 | -- | -- | 0.775 | -- | -- | -0.256 | -- | 23.6 | 530 | -- | -- |
| 182.67 | 0.631 | 3.89 | -- | -- | -- | -- | -- | -0.367 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 147.24 | temperature | 15 | 720 | > th | dose dependent | sin | 10 | NA |
| 4 | 147.49 | temperature | 30 | 720 | < th | dose dependent | rect. | 20 | 13 |
| 8 | 147.63 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 17 |
| 12 | 147.77 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 15 |
| 15 | 147.80 | temperature | 30 | 720 | < th | dose dependent | sin | 10 | NA |
| 183 | 149.09 | temperature | 25 | 720 | < th | dose dependent | rect. | 10 | 23 |
| 192 | 149.14 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 202 | 149.19 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 23 |
| 219 | 149.33 | temperature | 15 | 720 | > th | dose dependent | rect. | 24 | 7 |
| 223 | 149.35 | temperature | 25 | 720 | < th | dose dependent | rect. | 7 | 23 |
| 224 | 149.36 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 10 |
| 228 | 149.38 | temperature | 25 | 720 | < th | dose dependent | rect. | 24 | 23 |
| 296 | 149.76 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 12 |
| 357 | 150.10 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 6 |
| 377 | 150.23 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 4 |
| 403 | 150.36 | temperature | 15 | 270 | > th | dose dependent | rect. | 21 | 23 |
| 422 | 150.49 | wind | 7 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 423 | 150.49 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 21 |
| 439 | 150.57 | temperature | 15 | 270 | > th | dose dependent | rect. | 24 | 23 |
| 451 | 150.68 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 454 | 150.68 | temperature | 10 | 270 | > th | dose dependent | rect. | 8 | 23 |
| 465 | 150.73 | wind | 7 | 43200 | > th | dose dependent | rect. | 13 | 21 |
| 466 | 150.74 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 6 |
| 467 | 150.74 | wind | 7 | 43200 | > th | dose dependent | rect. | 14 | 19 |
| 475 | 150.77 | temperature | 20 | 720 | > th | dose independent | rect. | 16 | 21 |
| 512 | 150.89 | wind | 9 | 43200 | > th | dose dependent | sin | 14 | NA |
| 534 | 150.97 | temperature | 25 | 720 | < th | dose dependent | rect. | 23 | 3 |
| 558 | 151.06 | temperature | 20 | 720 | > th | dose independent | rect. | 19 | 17 |
| 561 | 151.07 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 6 |
| 562 | 151.07 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 12 |
| 565 | 151.09 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 3 |
| 571 | 151.10 | wind | 5 | 43200 | > th | dose independent | rect. | 14 | 13 |
| 575 | 151.13 | wind | 9 | 43200 | > th | dose independent | rect. | 13 | 20 |
| 587 | 151.16 | wind | 9 | 43200 | < th | dose independent | rect. | 13 | 21 |
| 598 | 151.19 | wind | 7 | 43200 | < th | dose independent | rect. | 14 | 19 |
| 599 | 151.20 | wind | 7 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 627 | 151.26 | wind | 5 | 43200 | < th | dose independent | rect. | 14 | 13 |
| 645 | 151.30 | wind | 5 | 43200 | > th | dose dependent | rect. | 14 | 13 |
| 655 | 151.32 | temperature | 20 | 720 | > th | dose independent | rect. | 19 | 23 |
| 661 | 151.33 | temperature | 15 | 270 | > th | dose dependent | no | NA | NA |
| 674 | 151.36 | wind | 9 | 43200 | > th | dose independent | sin | 13 | NA |
| 678 | 151.37 | wind | 5 | 43200 | < th | dose independent | rect. | 16 | 9 |
| 695 | 151.41 | wind | 9 | 43200 | > th | dose dependent | sin | 17 | NA |
| 713 | 151.44 | temperature | 20 | 720 | < th | dose independent | rect. | 20 | 20 |
| 794 | 151.60 | wind | 5 | 43200 | > th | dose independent | sin | 15 | NA |
| 809 | 151.62 | wind | 5 | 43200 | < th | dose independent | sin | 15 | NA |
| 853 | 151.69 | wind | 7 | 43200 | > th | dose dependent | rect. | 6 | 15 |
| 875 | 151.73 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 13 |
| 887 | 151.75 | wind | 9 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 888 | 151.75 | temperature | 30 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 917 | 151.78 | temperature | 20 | 720 | < th | dose independent | rect. | 1 | 21 |
| 919 | 151.78 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 1 |
| 930 | 151.79 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 6 |
| 934 | 151.79 | wind | 7 | 43200 | > th | dose dependent | rect. | 2 | 19 |
| 935 | 151.79 | wind | 7 | 43200 | > th | dose dependent | rect. | 24 | 21 |
| 943 | 151.80 | temperature | 15 | 1440 | > th | dose dependent | rect. | 21 | 1 |
| 951 | 151.81 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 5 |
| 995 | 151.87 | temperature | 20 | 720 | > th | dose independent | no | NA | NA |
| 998 | 151.87 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 1 |