BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0204300 Os04g0204300|AK107177
(137 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0204300 Conserved hypothetical protein 280 3e-76
Os12g0432300 89 9e-19
Os09g0284100 82 1e-16
Os08g0563000 82 2e-16
Os08g0114900 80 5e-16
Os05g0320050 79 8e-16
Os04g0122700 79 1e-15
Os07g0485366 77 4e-15
Os11g0284533 76 7e-15
Os04g0231300 75 2e-14
Os08g0378200 74 4e-14
Os03g0570725 71 3e-13
>Os04g0204300 Conserved hypothetical protein
Length = 137
Score = 280 bits (715), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 137/137 (100%), Positives = 137/137 (100%)
Query: 1 MIPTPAKVSGRPREFSKTATVRVENGHISIDNLTTELRRLVPVRFEVKETAQDTFVVQFP 60
MIPTPAKVSGRPREFSKTATVRVENGHISIDNLTTELRRLVPVRFEVKETAQDTFVVQFP
Sbjct: 1 MIPTPAKVSGRPREFSKTATVRVENGHISIDNLTTELRRLVPVRFEVKETAQDTFVVQFP 60
Query: 61 STIELDRLHRVGRVRSFDFGVDLLFNKWEQEIEAKFVLKKTWFRVYGVPYEIRDFLSLHA 120
STIELDRLHRVGRVRSFDFGVDLLFNKWEQEIEAKFVLKKTWFRVYGVPYEIRDFLSLHA
Sbjct: 61 STIELDRLHRVGRVRSFDFGVDLLFNKWEQEIEAKFVLKKTWFRVYGVPYEIRDFLSLHA 120
Query: 121 VGSVIGNTTMVDMVYLR 137
VGSVIGNTTMVDMVYLR
Sbjct: 121 VGSVIGNTTMVDMVYLR 137
>Os12g0432300
Length = 782
Score = 89.0 bits (219), Expect = 9e-19, Method: Composition-based stats.
Identities = 48/135 (35%), Positives = 74/135 (54%), Gaps = 2/135 (1%)
Query: 5 PAKVSGRPREFSKTATVRVENGHISIDNLTTELRRLVPVRFE--VKETAQDTFVVQFPST 62
P R R K V+V NG ++I+ + +EL RL+P ++E V + TF FPS
Sbjct: 284 PLSAGQRIRHDPKAVLVKVTNGQMTINAVISELHRLIPGKWEWVVHDNGDGTFRTIFPSA 343
Query: 63 IELDRLHRVGRVRSFDFGVDLLFNKWEQEIEAKFVLKKTWFRVYGVPYEIRDFLSLHAVG 122
+L R+ G+V + + +W E K+V+ K W + G+P E+R+FL + AVG
Sbjct: 344 AKLSRMVEWGKVHTKVSEAQMEIVEWGVGNEVKYVVPKVWVQCKGLPSELREFLIIWAVG 403
Query: 123 SVIGNTTMVDMVYLR 137
S++G T VDMV+ R
Sbjct: 404 SILGITKAVDMVFTR 418
>Os09g0284100
Length = 1585
Score = 81.6 bits (200), Expect = 1e-16, Method: Composition-based stats.
Identities = 47/133 (35%), Positives = 80/133 (60%), Gaps = 7/133 (5%)
Query: 11 RPREFSKTATVRVENGHISIDNLTTELRRLVPVRF--EVKETAQDTFVVQFPSTIELDRL 68
+ ++ SKTA VR+E G ++ + ++L+R++ ++ E E +++FVV FPS IEL R
Sbjct: 655 KSKKGSKTALVRIEGGCLTKEKAVSQLQRIISTKWKWEPVEHEENSFVVPFPSKIELQRA 714
Query: 69 HRVGRVRSFDFGV----DLLFNKWEQEIEAKFVLKKTWFRVYGVPYEIRDFLSLHAVGSV 124
G + GV L F +W ++ E F+L K W RV+G+ ++R++L++ AVGS+
Sbjct: 715 IAYGGANVKENGVLTGARLKFEEWNEK-EEGFLLPKVWVRVFGLRKKLREYLNIWAVGSL 773
Query: 125 IGNTTMVDMVYLR 137
+G T +DM R
Sbjct: 774 LGATQTMDMKMTR 786
>Os08g0563000
Length = 1689
Score = 81.6 bits (200), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 77/138 (55%), Gaps = 4/138 (2%)
Query: 2 IPTPAKVSGRPREFSKTATVRVENGHISIDNLTTELRRLVPV--RFEVKETAQDTFVVQF 59
IP PA R R + A V++ NG +++ + +EL RL+P R+ V + +TF F
Sbjct: 642 IPLPA--GQRIRHDPRAALVKISNGQMTVKAVVSELERLIPGKWRWVVHDNGDNTFHTIF 699
Query: 60 PSTIELDRLHRVGRVRSFDFGVDLLFNKWEQEIEAKFVLKKTWFRVYGVPYEIRDFLSLH 119
PS EL+R+ G+V + + + E K+V+ K W + G+P E+R++L +
Sbjct: 700 PSAAELNRMVEWGKVHTKVGEAQMEIIERGVGNEVKYVIPKVWVQCKGLPSELREYLIIW 759
Query: 120 AVGSVIGNTTMVDMVYLR 137
AVGS++G T VDM++ R
Sbjct: 760 AVGSILGITKAVDMLFTR 777
>Os08g0114900
Length = 1091
Score = 80.1 bits (196), Expect = 5e-16, Method: Composition-based stats.
Identities = 46/138 (33%), Positives = 76/138 (55%), Gaps = 4/138 (2%)
Query: 2 IPTPAKVSGRPREFSKTATVRVENGHISIDNLTTELRRLVP--VRFEVKETAQDTFVVQF 59
IP PA R R + A V++ NG +++ + +EL RL+P R+ V + +TF F
Sbjct: 209 IPLPA--GQRIRHDPRAALVKISNGQMTVKAVVSELERLIPGKWRWVVHDNGDNTFHTIF 266
Query: 60 PSTIELDRLHRVGRVRSFDFGVDLLFNKWEQEIEAKFVLKKTWFRVYGVPYEIRDFLSLH 119
PS EL+R+ G+V + + + E K+V+ K W + G+P +R++L +
Sbjct: 267 PSAAELNRMVEWGKVHTKVGEAQMEIIERGVGNEVKYVIPKVWVQCKGLPSGLREYLIIW 326
Query: 120 AVGSVIGNTTMVDMVYLR 137
AVGS++G T VDM++ R
Sbjct: 327 AVGSILGITKAVDMLFTR 344
>Os05g0320050
Length = 561
Score = 79.3 bits (194), Expect = 8e-16, Method: Composition-based stats.
Identities = 47/140 (33%), Positives = 74/140 (52%), Gaps = 20/140 (14%)
Query: 7 KVSGRPREFSKTATVRVENGHISIDNLTTELRRLVPVRFE--VKETAQDTFVVQFPSTIE 64
K+ PR A ++V G +S++++ EL RL+P R+ V + DTF FPS E
Sbjct: 77 KIKHEPR----AALIKVSKGKLSVNDVIVELERLIPGRWRWVVHDNGDDTFRTMFPSAAE 132
Query: 65 LDRLHRVGRVRSFDFGVDLLFNKWEQEI-------EAKFVLKKTWFRVYGVPYEIRDFLS 117
L R+ G+V + + E EI E K+V+ K W + G+P E+R++L
Sbjct: 133 LRRMVEWGKVHT-------KVGEAEMEIVERGVGNEVKYVIPKVWVQCKGLPSELREYLI 185
Query: 118 LHAVGSVIGNTTMVDMVYLR 137
+ AVGS++ T VDM++ R
Sbjct: 186 IWAVGSILSITKAVDMLFTR 205
>Os04g0122700
Length = 316
Score = 78.6 bits (192), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 74/133 (55%), Gaps = 2/133 (1%)
Query: 7 KVSGRPREFSKTATVRVENGHISIDNLTTELRRLVPVRFE--VKETAQDTFVVQFPSTIE 64
K R + K A V+V G ++++++ +EL RL+P ++ V + TF FPS E
Sbjct: 150 KAGQRIKPEPKAALVKVNKGQMTVNSVISELERLIPGKWNWVVHDNGDGTFRAIFPSAAE 209
Query: 65 LDRLHRVGRVRSFDFGVDLLFNKWEQEIEAKFVLKKTWFRVYGVPYEIRDFLSLHAVGSV 124
L R+ G+V + ++ + E K+V+ K W + G+P E+R++L + AVGS+
Sbjct: 210 LRRMVEWGKVHTKVGDAEMEIVERGVGNEVKYVISKVWVQCKGLPSELREYLIICAVGSL 269
Query: 125 IGNTTMVDMVYLR 137
+G T VDM++ R
Sbjct: 270 LGITKAVDMLFTR 282
>Os07g0485366
Length = 1457
Score = 77.0 bits (188), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 46/126 (36%), Positives = 68/126 (53%), Gaps = 5/126 (3%)
Query: 16 SKTATVRVENGHISIDNLTTELRRLVPV--RFEVKETAQDTFVVQFPSTIELDRLHRVGR 73
+ TA V + GH+ D + TEL RL+ +E +D+F+V FPS EL R+ V
Sbjct: 90 APTALVTITGGHLGADGVQTELARLIRADWNWEALPHGKDSFLVTFPSEEELKRMADV-E 148
Query: 74 VRSFDFGVDLLFNKWEQ--EIEAKFVLKKTWFRVYGVPYEIRDFLSLHAVGSVIGNTTMV 131
R + GV L ++W++ ++ + L W V GVP+ R +L A+GSVIG T V
Sbjct: 149 FRLKNHGVALTISEWQEAGDVIPSYELDMAWVHVTGVPHAWRHYLGFWALGSVIGATEEV 208
Query: 132 DMVYLR 137
DM+ R
Sbjct: 209 DMLTFR 214
>Os11g0284533
Length = 733
Score = 76.3 bits (186), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 46/140 (32%), Positives = 76/140 (54%), Gaps = 8/140 (5%)
Query: 2 IPTPA--KVSGRPREFSKTATVRVENGHISIDNLTTELRRLVPV--RFEVKETAQDTFVV 57
IP A K+ PR A ++V G ++++ + +EL RL+P R+ V + +F
Sbjct: 170 IPLSAGQKIKHEPR----AALIKVSKGQMTVNAVISELERLIPGGWRWVVHDNGNGSFRT 225
Query: 58 QFPSTIELDRLHRVGRVRSFDFGVDLLFNKWEQEIEAKFVLKKTWFRVYGVPYEIRDFLS 117
FPS EL R+ G+V + ++ + E K+V+ K W + G+P E+R++L
Sbjct: 226 IFPSAAELKRMVEWGKVHTKVGDAEMQIVERGVGNEVKYVIPKVWVQCKGIPSELREYLI 285
Query: 118 LHAVGSVIGNTTMVDMVYLR 137
+ AVGS++G T VDMV+ R
Sbjct: 286 IWAVGSILGITKTVDMVFTR 305
>Os04g0231300
Length = 1200
Score = 74.7 bits (182), Expect = 2e-14, Method: Composition-based stats.
Identities = 44/124 (35%), Positives = 69/124 (55%), Gaps = 5/124 (4%)
Query: 18 TATVRVENGHISIDNLTTELRRLVPV--RFEVKETAQDTFVVQFPSTIELDRLHRVGRVR 75
TA V + GH+S DN+ EL RLV ++E Q++++V FPS EL R+ V R
Sbjct: 332 TALVSIGGGHLSADNVQGELARLVRADWKWEAIPHEQNSYLVTFPSAEELKRMDDV-EFR 390
Query: 76 SFDFGVDLLFNKWEQ--EIEAKFVLKKTWFRVYGVPYEIRDFLSLHAVGSVIGNTTMVDM 133
+ GV L + W+ ++ + L + W + GVP++ R +L+ A+G V+G T VDM
Sbjct: 391 LKNHGVSLSISDWKSSTDVTPAYQLDEVWVHITGVPHKWRHYLAFWALGCVVGVTQEVDM 450
Query: 134 VYLR 137
+ R
Sbjct: 451 LTFR 454
>Os08g0378200
Length = 831
Score = 73.6 bits (179), Expect = 4e-14, Method: Composition-based stats.
Identities = 44/140 (31%), Positives = 74/140 (52%), Gaps = 8/140 (5%)
Query: 2 IPTPA--KVSGRPREFSKTATVRVENGHISIDNLTTELRRLVPV--RFEVKETAQDTFVV 57
IP A K+ PR A ++V G ++++ + +EL RL+P R+ V + +F
Sbjct: 247 IPLSAGQKIKHEPR----AALIKVSKGQMTVNAVISELERLIPRGWRWVVHDNGDGSFRT 302
Query: 58 QFPSTIELDRLHRVGRVRSFDFGVDLLFNKWEQEIEAKFVLKKTWFRVYGVPYEIRDFLS 117
FP EL R+ G+V + ++ + E K+V+ W + G+P E+R++L
Sbjct: 303 IFPFAAELKRMVEWGKVHTKVGDAEMQIVERGVGNEVKYVIPNVWVQCKGIPSELREYLI 362
Query: 118 LHAVGSVIGNTTMVDMVYLR 137
+ AVGS++G T VDMV+ R
Sbjct: 363 IWAVGSILGITKAVDMVFTR 382
>Os03g0570725
Length = 408
Score = 70.9 bits (172), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 70/130 (53%), Gaps = 5/130 (3%)
Query: 12 PREFSKTATVRVENGHISIDNLTTELRRLVPVRFEVKET--AQDTFVVQFPSTIELDRLH 69
P + + TA V + +GH++ + EL RL+ + K ++++V FPS EL+R+
Sbjct: 239 PPKPAPTALVTILDGHLAASAVQNELARLIRADWNWKAVPHGDNSYLVTFPSEEELNRMD 298
Query: 70 RVGRVRSFDFGVDLLFNKWEQE--IEAKFVLKKTWFRVYGVPYEIRDFLSLHAVGSVIGN 127
V R + GV + +W+Q+ I + L + W + GVP+ R +L A+G+V+G
Sbjct: 299 DV-EFRLKNHGVSITIQQWQQDSDIIPVYQLDEVWVHITGVPHSWRHYLCFWALGTVVGT 357
Query: 128 TTMVDMVYLR 137
T VDM+ R
Sbjct: 358 TQEVDMLTFR 367
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.325 0.139 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,460,549
Number of extensions: 164498
Number of successful extensions: 497
Number of sequences better than 1.0e-10: 12
Number of HSP's gapped: 500
Number of HSP's successfully gapped: 12
Length of query: 137
Length of database: 17,035,801
Length adjustment: 90
Effective length of query: 47
Effective length of database: 12,336,541
Effective search space: 579817427
Effective search space used: 579817427
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 150 (62.4 bits)