BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0170500 Os04g0170500|AK103323
(170 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0170500 Hypothetical protein 301 2e-82
Os08g0461500 160 5e-40
Os10g0327700 96 1e-20
Os10g0398000 95 2e-20
Os05g0479100 87 6e-18
Os10g0417100 70 1e-12
>Os04g0170500 Hypothetical protein
Length = 170
Score = 301 bits (771), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 151/170 (88%), Positives = 151/170 (88%)
Query: 1 QKWIWIKRGEVRPLLGFPARDDEIRRFGDGARRIWKVPEKRCDHRTFAQVVMERRPPNRL 60
QKWIWIKRGEVRPLLGFPARDDEIRRFGDGARRIWKVPEKRCDHRTFAQVVMERRPPNRL
Sbjct: 1 QKWIWIKRGEVRPLLGFPARDDEIRRFGDGARRIWKVPEKRCDHRTFAQVVMERRPPNRL 60
Query: 61 DWQANKRRATEQXXXXXXXXXXXXXXXXXXXEEEELHRQLLAQNPRANQGAQWKPQGLPG 120
DWQANKRRATEQ EEEELHRQLLAQNPRANQGAQWKPQGLPG
Sbjct: 61 DWQANKRRATEQGGGDWGARGGGDWGACGAREEEELHRQLLAQNPRANQGAQWKPQGLPG 120
Query: 121 TDGERGARAPKIKCFKCGREGHHQAARPNPSLCYSCHSSVEEALSSWGGN 170
TDGERGARAPKIKCFKCGREGHHQAARPNPSLCYSCHSSVEEALSSWGGN
Sbjct: 121 TDGERGARAPKIKCFKCGREGHHQAARPNPSLCYSCHSSVEEALSSWGGN 170
>Os08g0461500
Length = 1502
Score = 160 bits (404), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 92/172 (53%), Positives = 111/172 (64%), Gaps = 16/172 (9%)
Query: 2 KWIWIKRGEVRPLLGFPARDDEIRRFGDGARRIWKVPEKRCDHRTFAQVVMERR-PPNRL 60
+W+W+++G + P LGFPAR +EIRRFGD ARRIW+V E+RCDHRTFAQVVM+RR PP R
Sbjct: 155 EWVWVRKGSLSPQLGFPARSEEIRRFGDSARRIWRVLERRCDHRTFAQVVMKRRPPPGRP 214
Query: 61 DWQANKRRATEQXX-------XXXXXXXXXXXXXXXXXEEEELHRQLLAQNPRANQGAQW 113
DWQANKR+A E EEEEL +QLLA+ + G
Sbjct: 215 DWQANKRKAMESGDGGGDWGRQAGGDWGKQAGGSWAHREEEELRKQLLAKGNQV-VGDPR 273
Query: 114 KPQGLPGTD----GERGA--RAPKIKCFKCGREGHHQAARPNPSLCYSCHSS 159
+P G PG + G+RGA P +KCFKCGREGHHQA+ NP LCYSCHSS
Sbjct: 274 RP-GRPGQERRDWGDRGAGGSKPAMKCFKCGREGHHQASCTNPPLCYSCHSS 324
>Os10g0327700
Length = 1252
Score = 95.9 bits (237), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 70/189 (37%), Positives = 86/189 (45%), Gaps = 31/189 (16%)
Query: 2 KWIWIKRGEV-RPLLGFPARDDEIRRFGDGARRIWKVPEKRCDHRTFAQVV----MERRP 56
+W+W+ RG V P LGFPAR EI +FG ARRIWK +R D R+FA+VV MERRP
Sbjct: 83 RWLWVPRGRVLEPQLGFPARKAEIHKFGGSARRIWKAARRRVDSRSFAEVVRGDSMERRP 142
Query: 57 PN-RLD-WQANKRRATEQXXXXXXXXXXXXXXXXXXXEEEELHRQLL------------- 101
PN R D WQ+NKRRA ++ Q
Sbjct: 143 PNPRPDQWQSNKRRAVDEEQRDWGDRAPWEREEEELRGRLLGQNQRRPEGRWRPDERREG 202
Query: 102 AQNPRANQGAQWKPQGLPGTDGER-----------GARAPKIKCFKCGREGHHQAARPNP 150
+N + +G W+ + G D R G R IKC+ CG GHH P
Sbjct: 203 GRNWQGEKGRVWQGEQREGLDVRRFDKGRKEQVQEGPREDTIKCYNCGEFGHHLVRCTKP 262
Query: 151 SLCYSCHSS 159
SLCY C SS
Sbjct: 263 SLCYVCKSS 271
>Os10g0398000
Length = 1138
Score = 95.1 bits (235), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/108 (51%), Positives = 61/108 (56%), Gaps = 11/108 (10%)
Query: 52 MERRPPNRLDWQANKRRATEQXXXXXXXXXXXXXXXXXXXEEEELHRQLLAQNPRANQGA 111
MERRPP R DWQANKR+A EQ EEE R+ L PR N
Sbjct: 1 MERRPPIRPDWQANKRQAMEQGGGDWGIRDVR---------EEEGLRRPLPNQPRVNPNV 51
Query: 112 QWKPQGLPGTDGERGARAPKIKCFKCGREGHHQAARPNPSLCYSCHSS 159
KPQG + ERGA KIKCFKCGREGHHQA NP LCYSCH++
Sbjct: 52 --KPQGRQAAEMERGAGTMKIKCFKCGREGHHQANYTNPPLCYSCHNT 97
>Os05g0479100
Length = 1584
Score = 87.0 bits (214), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 43/63 (68%), Positives = 48/63 (76%), Gaps = 2/63 (3%)
Query: 98 RQLLAQNPRANQGAQWKPQGLPGTDGERGARAP-KIKCFKCGREGHHQAARPNPSLCYSC 156
RQLLAQNPR NQ + + QG PG + ERG P KIKCFKCGREGHHQA PNP LCYSC
Sbjct: 3 RQLLAQNPR-NQALRPQSQGRPGFEAERGGGGPPKIKCFKCGREGHHQATCPNPPLCYSC 61
Query: 157 HSS 159
H++
Sbjct: 62 HNT 64
>Os10g0417100
Length = 734
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 78/189 (41%), Gaps = 37/189 (19%)
Query: 3 WIWI-KRGEVRPLLGFPARDDEIRRFGDGARRIWKVPEKRCDHRTFAQVV---MERRP-- 56
W+W+ K G + P LGFPA E+ RFG RRIW+ P + D R+F +V M+R+P
Sbjct: 18 WVWVPKGGSLSPHLGFPATRREVVRFGATTRRIWRAPARLTDGRSFLEVAKGSMDRKPQF 77
Query: 57 --PNRLDWQANKRRA----------TEQXXXXXXXXXXXXXXXXXXXEEEELHRQLLA-- 102
P++ W NKRRA + + EE Q +
Sbjct: 78 QRPDQ--WVPNKRRAFEEEGGGGNWGNRNLQEREERELRNRLMGQQQQREEGRWQQVERR 135
Query: 103 ------QNPRANQGAQW-----KPQGLPGTDGERGARAP----KIKCFKCGREGHHQAAR 147
Q R +G W +P GE G P +IKCF CG G+HQ
Sbjct: 136 GANKQWQGDRNREGGAWEGGDRRPTRGKEKLGEEGRSGPSQKEEIKCFNCGESGYHQVNC 195
Query: 148 PNPSLCYSC 156
P LCY C
Sbjct: 196 QKPPLCYVC 204
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.135 0.451
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,987,327
Number of extensions: 288296
Number of successful extensions: 837
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 826
Number of HSP's successfully gapped: 6
Length of query: 170
Length of database: 17,035,801
Length adjustment: 94
Effective length of query: 76
Effective length of database: 12,127,685
Effective search space: 921704060
Effective search space used: 921704060
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 152 (63.2 bits)