Os04g0170500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os04g0170500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 48.06 | 0.326 | 8.78 | -1.4 | 0.453 | 0.764 | 0.399 | -0.614 | 0.163 | 5.99 | 26.6 | 822 | -- | -- |
| 48.3 | 0.324 | 8.75 | -1.26 | 0.451 | 0.729 | 0.475 | -- | 0.242 | 5.9 | 26.8 | 836 | -- | -- |
| 48.06 | 0.323 | 8.78 | -1.45 | 0.433 | 0.78 | -- | -0.94 | 0.176 | 5.94 | 26.9 | 849 | -- | -- |
| 48.86 | 0.326 | 8.75 | -1.25 | 0.434 | 0.724 | -- | -- | 0.236 | 5.83 | 26.8 | 852 | -- | -- |
| 52.7 | 0.338 | 8.78 | -1.38 | -- | 0.818 | -- | -0.493 | 0.175 | -- | 26.9 | 1121 | -- | -- |
| 63.09 | 0.372 | 8.73 | -1.03 | 0.314 | -- | 0.485 | -- | 0.376 | 3.2 | -- | -- | -- | -- |
| 63.85 | 0.374 | 8.73 | -1.03 | 0.316 | -- | -- | -- | 0.373 | 3.12 | -- | -- | -- | -- |
| 52.72 | 0.338 | 8.78 | -1.26 | -- | 0.776 | -- | -- | 0.182 | -- | 26.6 | 1146 | -- | -- |
| 86.77 | 0.434 | 8.7 | -- | 0.356 | 0.51 | -- | -- | 0.449 | 5.62 | 28.2 | 930 | -- | -- |
| 69.54 | 0.39 | 8.73 | -1.02 | -- | -- | -- | -- | 0.382 | -- | -- | -- | -- | -- |
| 92.07 | 0.449 | 8.7 | -- | 0.296 | -- | -- | -- | 0.489 | 3.11 | -- | -- | -- | -- |
| 91.19 | 0.445 | 8.71 | -- | -- | 0.351 | -- | -- | 0.464 | -- | 28.71 | 2666 | -- | -- |
| 97.06 | 0.46 | 8.7 | -- | -- | -- | -- | -- | 0.495 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 44.05 | temperature | 25 | 720 | > th | dose independent | rect. | 18 | 1 |
| 3 | 44.87 | temperature | 25 | 720 | > th | dose independent | rect. | 16 | 5 |
| 10 | 46.17 | temperature | 20 | 720 | > th | dose dependent | rect. | 16 | 5 |
| 12 | 46.44 | temperature | 20 | 720 | > th | dose dependent | rect. | 18 | 1 |
| 22 | 46.82 | temperature | 10 | 720 | > th | dose dependent | rect. | 16 | 7 |
| 23 | 46.85 | temperature | 25 | 720 | < th | dose independent | rect. | 16 | 5 |
| 31 | 47.07 | temperature | 25 | 720 | < th | dose independent | rect. | 15 | 9 |
| 60 | 47.73 | temperature | 20 | 270 | > th | dose dependent | rect. | 18 | 10 |
| 73 | 47.90 | temperature | 30 | 720 | < th | dose dependent | rect. | 15 | 9 |
| 85 | 48.04 | temperature | 25 | 720 | > th | dose independent | sin | 17 | NA |
| 90 | 48.07 | temperature | 25 | 720 | > th | dose dependent | rect. | 16 | 12 |
| 100 | 48.11 | temperature | 25 | 720 | < th | dose independent | sin | 17 | NA |
| 107 | 48.17 | temperature | 20 | 270 | > th | dose dependent | rect. | 21 | 7 |
| 175 | 48.73 | temperature | 25 | 720 | > th | dose dependent | sin | 12 | NA |
| 218 | 49.05 | temperature | 25 | 720 | > th | dose independent | rect. | 11 | 13 |
| 245 | 49.22 | temperature | 30 | 720 | < th | dose dependent | rect. | 19 | 1 |
| 303 | 49.49 | temperature | 30 | 270 | < th | dose dependent | rect. | 16 | 15 |
| 318 | 49.54 | temperature | 20 | 10 | > th | dose dependent | rect. | 22 | 8 |
| 338 | 49.67 | temperature | 15 | 90 | > th | dose dependent | rect. | 11 | 18 |
| 341 | 49.69 | temperature | 30 | 720 | < th | dose dependent | sin | 18 | NA |
| 383 | 49.86 | temperature | 25 | 10 | < th | dose dependent | sin | 13 | NA |
| 444 | 50.17 | temperature | 25 | 4320 | < th | dose independent | rect. | 17 | 2 |
| 448 | 50.19 | radiation | 1 | 720 | < th | dose dependent | rect. | 17 | 8 |
| 455 | 50.22 | temperature | 25 | 4320 | > th | dose independent | rect. | 16 | 3 |
| 478 | 50.28 | temperature | 25 | 10 | < th | dose dependent | rect. | 16 | 12 |
| 503 | 50.38 | temperature | 20 | 720 | > th | dose dependent | rect. | 11 | 12 |
| 508 | 50.39 | temperature | 10 | 270 | > th | dose dependent | rect. | 9 | 19 |
| 602 | 50.65 | temperature | 25 | 720 | < th | dose independent | rect. | 5 | 19 |
| 666 | 50.77 | temperature | 25 | 720 | > th | dose independent | rect. | 16 | 21 |
| 679 | 50.81 | temperature | 25 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 731 | 50.91 | radiation | 10 | 720 | < th | dose independent | rect. | 16 | 9 |
| 800 | 51.02 | temperature | 10 | 720 | > th | dose dependent | rect. | 11 | 10 |
| 826 | 51.06 | temperature | 30 | 90 | < th | dose dependent | rect. | 19 | 14 |
| 838 | 51.09 | temperature | 10 | 720 | > th | dose dependent | rect. | 9 | 14 |
| 904 | 51.18 | temperature | 20 | 90 | > th | dose independent | rect. | 11 | 18 |
| 955 | 51.24 | temperature | 20 | 4320 | > th | dose dependent | rect. | 15 | 8 |
| 976 | 51.26 | temperature | 10 | 4320 | > th | dose dependent | rect. | 16 | 3 |
| 990 | 51.29 | temperature | 10 | 4320 | > th | dose dependent | rect. | 18 | 1 |