BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0129600 Os04g0129600|AK070089
         (225 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os04g0129600  Conserved hypothetical protein                      310   5e-85
Os02g0754800  Conserved hypothetical protein                       99   3e-21

>Os04g0129600 Conserved hypothetical protein
          Length = 225

 Score =  310 bits (794), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 161/213 (75%), Positives = 161/213 (75%)

Query: 1   SPAQQSAVVGPFPSSSENDGGSPFLRRHAXXXXXXXXXXXXXXATAHXXXXXXXXXXXXX 60
           SPAQQSAVVGPFPSSSENDGGSPFLRRHA              ATAH             
Sbjct: 1   SPAQQSAVVGPFPSSSENDGGSPFLRRHALLSPPPPPPPPLLSATAHGGGGGGRRGRGGV 60

Query: 61  XXXXXXALASGAHXXXXXXXXXXXXXXXXXXXAIEKASQNQQIVNAIGAPIVRGPWYSAS 120
                 ALASGAH                   AIEKASQNQQIVNAIGAPIVRGPWYSAS
Sbjct: 61  GPSRGGALASGAHRRRRRQRRQRPLRLPLLLQAIEKASQNQQIVNAIGAPIVRGPWYSAS 120

Query: 121 IAVNHARHSVSCTFPVSAPQGNGLLKFKAVRSGDESWFSFLQPNDWEILLMDAILDVPTD 180
           IAVNHARHSVSCTFPVSAPQGNGLLKFKAVRSGDESWFSFLQPNDWEILLMDAILDVPTD
Sbjct: 121 IAVNHARHSVSCTFPVSAPQGNGLLKFKAVRSGDESWFSFLQPNDWEILLMDAILDVPTD 180

Query: 181 DGKHQTIRVTIPDNTAPPPAIDCKACKSQPTLT 213
           DGKHQTIRVTIPDNTAPPPAIDCKACKSQPTLT
Sbjct: 181 DGKHQTIRVTIPDNTAPPPAIDCKACKSQPTLT 213



>Os02g0754800 Conserved hypothetical protein
          Length = 161

 Score = 98.6 bits (244), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 42/61 (68%), Positives = 53/61 (86%)

Query: 93  AIEKASQNQQIVNAIGAPIVRGPWYSASIAVNHARHSVSCTFPVSAPQGNGLLKFKAVRS 152
           AI+KA++NQ++V AIG PIVRGPWY AS+AV H R SVSCTFPVS PQG+G+ +FKA+R+
Sbjct: 100 AIKKATENQEVVEAIGVPIVRGPWYDASLAVGHRRRSVSCTFPVSGPQGSGIFQFKAIRN 159

Query: 153 G 153
           G
Sbjct: 160 G 160



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.315    0.129    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,541,207
Number of extensions: 238308
Number of successful extensions: 569
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 568
Number of HSP's successfully gapped: 2
Length of query: 225
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 128
Effective length of database: 11,971,043
Effective search space: 1532293504
Effective search space used: 1532293504
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 154 (63.9 bits)