Os04g0129600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0129600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 77.32 | 0.413 | 7.4 | 1.5 | 0.367 | 0.213 | 0.749 | -7.68 | -0.784 | 11.9 | 29.6 | 4012 | -- | -- |
| 86.01 | 0.432 | 7.59 | 0.103 | 0.356 | -0.566 | 0.489 | -- | -1.12 | 10.3 | 32.1 | 7564 | -- | -- |
| 79.55 | 0.415 | 7.41 | 1.48 | 0.368 | 0.197 | -- | -7.35 | -0.79 | 11.4 | 29.61 | 4086 | -- | -- |
| 84.44 | 0.428 | 7.61 | 0.0869 | 0.345 | -0.501 | -- | -- | -1.22 | 10.7 | 32.8 | 13290 | -- | -- |
| 87.78 | 0.436 | 7.41 | 1.56 | -- | 0.265 | -- | -7.44 | -0.766 | -- | 29.6 | 4119 | -- | -- |
| 98.32 | 0.465 | 7.59 | 0.229 | 0.33 | -- | 0.549 | -- | -1.01 | 11.3 | -- | -- | -- | -- |
| 99.54 | 0.467 | 7.58 | 0.25 | 0.33 | -- | -- | -- | -1.01 | 10.9 | -- | -- | -- | -- |
| 90.19 | 0.442 | 7.67 | 0.0208 | -- | -0.628 | -- | -- | -1.32 | -- | 32.7 | 13277 | -- | -- |
| 83.48 | 0.426 | 7.66 | -- | 0.317 | -0.612 | -- | -- | -1.29 | 10.7 | 32.8 | 13292 | -- | -- |
| 106.3 | 0.482 | 7.59 | 0.243 | -- | -- | -- | -- | -1.01 | -- | -- | -- | -- | -- |
| 101.18 | 0.471 | 7.59 | -- | 0.328 | -- | -- | -- | -1.04 | 10.8 | -- | -- | -- | -- |
| 90.13 | 0.442 | 7.66 | -- | -- | -0.657 | -- | -- | -1.32 | -- | 32.7 | 13258 | -- | -- |
| 107.86 | 0.485 | 7.6 | -- | -- | -- | -- | -- | -1.04 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 73.34 | temperature | 25 | 4320 | > th | dose dependent | rect. | 21 | 11 |
| 3 | 73.56 | temperature | 25 | 4320 | > th | dose dependent | rect. | 21 | 4 |
| 12 | 73.91 | temperature | 25 | 4320 | > th | dose dependent | rect. | 22 | 1 |
| 52 | 75.50 | temperature | 25 | 4320 | > th | dose dependent | rect. | 6 | 2 |
| 62 | 75.64 | temperature | 25 | 90 | > th | dose dependent | rect. | 18 | 23 |
| 80 | 75.94 | temperature | 25 | 4320 | > th | dose dependent | sin | 10 | NA |
| 86 | 76.06 | temperature | 25 | 720 | < th | dose independent | rect. | 7 | 2 |
| 90 | 76.15 | temperature | 25 | 720 | < th | dose independent | rect. | 6 | 5 |
| 115 | 76.60 | temperature | 25 | 4320 | > th | dose independent | rect. | 22 | 10 |
| 119 | 76.66 | temperature | 25 | 4320 | > th | dose independent | rect. | 1 | 1 |
| 132 | 76.82 | temperature | 30 | 1440 | > th | dose independent | rect. | 12 | 2 |
| 136 | 76.89 | temperature | 25 | 270 | > th | dose dependent | sin | 3 | NA |
| 140 | 76.95 | temperature | 30 | 1440 | > th | dose independent | rect. | 8 | 6 |
| 166 | 77.12 | temperature | 30 | 4320 | < th | dose independent | rect. | 4 | 10 |
| 169 | 77.13 | temperature | 30 | 4320 | < th | dose independent | rect. | 6 | 8 |
| 171 | 77.13 | temperature | 30 | 4320 | < th | dose independent | rect. | 2 | 12 |
| 176 | 77.14 | temperature | 30 | 4320 | < th | dose independent | rect. | 20 | 18 |
| 177 | 77.15 | temperature | 30 | 4320 | < th | dose independent | rect. | 8 | 6 |
| 199 | 77.32 | temperature | 25 | 30 | > th | dose dependent | rect. | 7 | 17 |
| 200 | 77.32 | temperature | 25 | 10 | > th | dose dependent | rect. | 12 | 23 |
| 201 | 77.33 | temperature | 30 | 4320 | < th | dose independent | sin | 7 | NA |
| 221 | 77.36 | temperature | 25 | 10 | > th | dose dependent | rect. | 7 | 23 |
| 231 | 77.42 | temperature | 25 | 30 | > th | dose dependent | rect. | 7 | 15 |
| 236 | 77.43 | temperature | 25 | 30 | > th | dose dependent | rect. | 7 | 21 |
| 264 | 77.51 | temperature | 25 | 30 | > th | dose dependent | rect. | 7 | 19 |
| 278 | 77.58 | temperature | 30 | 4320 | > th | dose independent | sin | 7 | NA |
| 287 | 77.62 | temperature | 30 | 4320 | < th | dose independent | rect. | 11 | 1 |
| 366 | 77.85 | temperature | 25 | 4320 | > th | dose independent | rect. | 19 | 9 |
| 425 | 77.94 | temperature | 25 | 720 | > th | dose dependent | rect. | 2 | 9 |
| 454 | 77.98 | temperature | 25 | 4320 | > th | dose dependent | rect. | 24 | 1 |
| 457 | 77.99 | temperature | 25 | 270 | > th | dose dependent | rect. | 2 | 13 |
| 493 | 78.04 | temperature | 25 | 720 | > th | dose dependent | rect. | 7 | 4 |
| 496 | 78.04 | temperature | 25 | 90 | > th | dose dependent | rect. | 1 | 23 |
| 501 | 78.05 | temperature | 25 | 90 | > th | dose dependent | rect. | 3 | 21 |
| 513 | 78.09 | temperature | 25 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 524 | 78.11 | temperature | 25 | 270 | > th | dose dependent | rect. | 6 | 10 |
| 538 | 78.13 | temperature | 25 | 90 | > th | dose dependent | sin | 23 | NA |
| 562 | 78.16 | temperature | 25 | 90 | > th | dose dependent | rect. | 23 | 23 |
| 586 | 78.20 | temperature | 25 | 90 | > th | dose dependent | no | NA | NA |
| 609 | 78.24 | temperature | 25 | 4320 | > th | dose independent | rect. | 22 | 6 |
| 671 | 78.35 | temperature | 30 | 4320 | < th | dose independent | rect. | 13 | 1 |
| 682 | 78.40 | temperature | 25 | 4320 | > th | dose independent | rect. | 6 | 2 |
| 710 | 78.42 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 12 |
| 782 | 78.50 | temperature | 30 | 720 | < th | dose dependent | rect. | 6 | 5 |
| 913 | 78.66 | temperature | 30 | 4320 | < th | dose independent | rect. | 4 | 17 |
| 939 | 78.67 | temperature | 30 | 4320 | < th | dose independent | rect. | 8 | 13 |
| 979 | 78.67 | temperature | 30 | 4320 | < th | dose independent | rect. | 8 | 23 |
| 982 | 78.67 | temperature | 30 | 4320 | > th | dose dependent | rect. | 11 | 1 |
| 985 | 78.68 | temperature | 30 | 4320 | < th | dose independent | no | NA | NA |