BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0128700 Os04g0128700|AK107172
         (471 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os04g0128700  Thioredoxin-like fold domain containing protein     728   0.0  

>Os04g0128700 Thioredoxin-like fold domain containing protein
          Length = 471

 Score =  728 bits (1878), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/471 (82%), Positives = 389/471 (82%)

Query: 1   MSSSDEHLRLPPRSGRGALHHRXXXXXXXXXISLHVXXXXXXXXXXXXRSSSTTREKRLE 60
           MSSSDEHLRLPPRSGRGALHHR         ISLHV            RSSSTTREKRLE
Sbjct: 1   MSSSDEHLRLPPRSGRGALHHRAAAAAPANAISLHVDAEADDGPAAAERSSSTTREKRLE 60

Query: 61  RFMEYSKRALVYEFTLATSLLQHRTASFTAGSAWAKAGVALLCAALFVDLMGSVYLALVT 120
           RFMEYSKRALVYEFTLATSLLQHRTASFTAGSAWAKAGVALLCAALFVDLMGSVYLALVT
Sbjct: 61  RFMEYSKRALVYEFTLATSLLQHRTASFTAGSAWAKAGVALLCAALFVDLMGSVYLALVT 120

Query: 121 RLLDAEATDASCRWHVVRVYASAVLLMSMPFCLLMSLNALYSFLAVALVPPIYLVLLLFA 180
           RLLDAEATDASCRWHVVRVYASAVLLMSMPFCLLMSLNALYSFLAVALVPPIYLVLLLFA
Sbjct: 121 RLLDAEATDASCRWHVVRVYASAVLLMSMPFCLLMSLNALYSFLAVALVPPIYLVLLLFA 180

Query: 181 KEXXXXXXXXXVLHEFPPPRGERTTVLISYEDYDGKLKSQFDASATVNXXXXXXXXXXXX 240
           KE         VLHEFPPPRGERTTVLISYEDYDGKLKSQFDASATVN            
Sbjct: 181 KEHHHHRHRGGVLHEFPPPRGERTTVLISYEDYDGKLKSQFDASATVNTIATGAGLTGTF 240

Query: 241 XXYSTSTDFSPNHAVTVSESLLFLTIVGAQFVMLVTAARPMFRKESSPARLAGFXXXXXX 300
             YSTSTDFSPNHAVTVSESLLFLTIVGAQFVMLVTAARPMFRKESSPARLAGF      
Sbjct: 241 FGYSTSTDFSPNHAVTVSESLLFLTIVGAQFVMLVTAARPMFRKESSPARLAGFLSLLVG 300

Query: 301 XXXXXXXXXAFAGAIDFLGGLALLAFSIDFLELVVFFKATFYKEALEEEPDAPPRPTSTT 360
                    AFAGAIDFLGGLALLAFSIDFLELVVFFKATFYKEALEEEPDAPPRPTSTT
Sbjct: 301 SLPVLLSLSAFAGAIDFLGGLALLAFSIDFLELVVFFKATFYKEALEEEPDAPPRPTSTT 360

Query: 361 TTDGLQLLWLCVMYIYFTALEALYQEQAGRKTKLELLEKARVLVYFWAFCCCSLDXXXXX 420
           TTDGLQLLWLCVMYIYFTALEALYQEQAGRKTKLELLEKARVLVYFWAFCCCSLD     
Sbjct: 361 TTDGLQLLWLCVMYIYFTALEALYQEQAGRKTKLELLEKARVLVYFWAFCCCSLDGGGRG 420

Query: 421 XXXXXXXXXXXXXXXXXXSLGRARYAVMGLAALDVLWRVARMFLVVAPVKP 471
                             SLGRARYAVMGLAALDVLWRVARMFLVVAPVKP
Sbjct: 421 KLPLLPPLEELRKHHHHLSLGRARYAVMGLAALDVLWRVARMFLVVAPVKP 471



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.326    0.136    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,146,585
Number of extensions: 367508
Number of successful extensions: 1294
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1292
Number of HSP's successfully gapped: 1
Length of query: 471
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 367
Effective length of database: 11,605,545
Effective search space: 4259235015
Effective search space used: 4259235015
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 158 (65.5 bits)