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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0128700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Thioredoxin-like fold domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.28 (0.065) R2 : 0.765
β1 : 1.76 (0.327) R2dD : 0.0355 R2D : -0.0659
β2 : 1.19 (0.141) R2dC : 0.0358 R2C : -0.166
β3 : -2.74 (0.24) R2dE : 0.0806 R2E : -0.105
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -7.74 (1.16) R2dD*E : 0.0526 R2D*E : -0.107
γ1 : -3.74 (0.138) R2dN8 : 0.653 R2N8 : 0.555
σ : 1.07
deviance : 529.46
__
_____
C
peak time of C : 2.38
E
wheather : temperature
threshold : 15.82
memory length : 1436
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 16.9
open length of G : 0.45

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
518.86 1.07 7.28 1.69 1.14 -2.91 1.84 -8.37 -3.74 1.89 15.22 1442 16.9 0.983
575.05 1.12 7.14 3.28 1.09 -3.22 1.9 -- -3.47 1.06 13.77 1430 17.3 0.0393
529.46 1.07 7.28 1.76 1.19 -2.74 -- -7.74 -3.74 2.38 15.82 1436 16.9 0.45
556.5 1.1 7.09 3.02 1.22 -2.54 -- -- -3.7 2.34 24.8 1449 17.5 0.3
606.2 1.15 7.27 1.79 -- -2.72 -- -7.58 -3.73 -- 16.06 1442 16.9 0.333
761.91 1.29 7.16 2.53 0.965 -- 1.31 -- -3.69 1.81 -- -- -- --
767.55 1.3 7.16 2.48 0.985 -- -- -- -3.7 2.34 -- -- -- --
627.23 1.17 7.14 3.05 -- -3.07 -- -- -3.6 -- 24.61 1466 17.4 0.301
797.33 1.32 7.16 -- 1.3 -2.43 -- -- -3.76 2.42 24.28 1459 18.9 0.4
825.08 1.34 7.15 2.53 -- -- -- -- -3.68 -- -- -- -- --
930.11 1.43 7.22 -- 1.03 -- -- -- -3.98 2.39 -- -- -- --
870.21 1.37 7.2 -- -- -2.36 -- -- -3.88 -- 24.9 1462 17.6 0.25
993.28 1.47 7.22 -- -- -- -- -- -3.96 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 519.85 temperature 15 1440 > th dose dependent rect. 17 1
13 532.51 temperature 30 1440 < th dose dependent rect. 17 1
25 538.29 temperature 30 30 < th dose dependent rect. 5 23
40 540.92 temperature 25 1440 > th dose dependent rect. 13 6
47 541.72 temperature 25 1440 > th dose dependent rect. 13 11
105 544.36 temperature 25 1440 > th dose dependent sin 17 NA
146 545.44 temperature 25 1440 > th dose dependent rect. 13 1
312 549.84 temperature 25 720 > th dose dependent rect. 17 21
335 550.11 temperature 25 720 > th dose dependent rect. 17 18
349 550.22 temperature 25 1440 > th dose dependent no NA NA
351 550.23 temperature 25 1440 > th dose dependent rect. 20 23
381 550.56 temperature 20 10 > th dose dependent rect. 3 23
440 551.57 temperature 25 1440 > th dose dependent rect. 17 23
468 552.23 temperature 25 1440 > th dose independent rect. 17 5
471 552.30 temperature 20 10 > th dose dependent no NA NA
513 553.50 temperature 10 1440 > th dose dependent sin 19 NA
532 553.93 temperature 30 10 < th dose dependent rect. 1 23
555 554.51 temperature 20 10 > th dose dependent rect. 24 23
569 554.68 temperature 20 10 > th dose dependent rect. 8 23
579 554.82 temperature 25 1440 < th dose independent rect. 17 5
601 555.36 temperature 25 720 > th dose dependent sin 10 NA
660 556.87 wind 9 43200 > th dose dependent rect. 18 12
763 558.57 temperature 30 10 < th dose dependent rect. 13 23
771 558.68 temperature 20 10 > th dose dependent rect. 15 23
787 558.92 temperature 30 30 < th dose dependent no NA NA
797 559.06 temperature 30 30 < th dose dependent rect. 11 23
816 559.34 temperature 30 30 < th dose dependent rect. 19 23
829 559.47 temperature 30 10 < th dose dependent rect. 17 23
842 559.67 temperature 10 720 > th dose dependent rect. 4 17
872 560.02 temperature 30 30 < th dose dependent rect. 15 23
959 561.22 temperature 30 30 < th dose dependent rect. 9 23
977 561.47 temperature 30 30 < th dose dependent rect. 23 23