BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0126900 Os04g0126900|AK121671
(106 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0126900 Conserved hypothetical protein 154 2e-38
Os04g0192350 Conserved hypothetical protein 139 4e-34
Os09g0122500 Hypothetical protein 98 2e-21
Os01g0384450 Hypothetical protein 92 1e-19
Os11g0415400 Conserved hypothetical protein 75 1e-14
Os01g0512001 Conserved hypothetical protein 74 2e-14
Os08g0319450 Conserved hypothetical protein 72 1e-13
Os11g0417266 Hypothetical protein 71 2e-13
>Os04g0126900 Conserved hypothetical protein
Length = 106
Score = 154 bits (388), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 79/95 (83%), Positives = 79/95 (83%)
Query: 12 LQTPQESLRTVQRGGRSTTVFSNSDLAXXXXXXXXXXXXXXXXWSETLRLSVFPHSSKER 71
LQTPQESLRTVQRGGRSTTVFSNSDLA WSETLRLSVFPHSSKER
Sbjct: 12 LQTPQESLRTVQRGGRSTTVFSNSDLAPPSSIPIQPIRRIRSSWSETLRLSVFPHSSKER 71
Query: 72 IPVISYVSCVVIALPMAARAMSDLLQLGSCPVGLP 106
IPVISYVSCVVIALPMAARAMSDLLQLGSCPVGLP
Sbjct: 72 IPVISYVSCVVIALPMAARAMSDLLQLGSCPVGLP 106
>Os04g0192350 Conserved hypothetical protein
Length = 154
Score = 139 bits (350), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 71/94 (75%), Positives = 74/94 (78%)
Query: 13 QTPQESLRTVQRGGRSTTVFSNSDLAXXXXXXXXXXXXXXXXWSETLRLSVFPHSSKERI 72
+TPQESLRTVQRGGRSTTVFSNSDLA WSETLRLSVFP+SSKERI
Sbjct: 61 KTPQESLRTVQRGGRSTTVFSNSDLAPPSSIPIQPIRRIRSSWSETLRLSVFPYSSKERI 120
Query: 73 PVISYVSCVVIALPMAARAMSDLLQLGSCPVGLP 106
PV+SY SCVVI LP ARAMSDLLQLGSCPVGLP
Sbjct: 121 PVMSYASCVVIGLPRTARAMSDLLQLGSCPVGLP 154
>Os09g0122500 Hypothetical protein
Length = 83
Score = 97.8 bits (242), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 47/52 (90%), Positives = 50/52 (96%)
Query: 55 WSETLRLSVFPHSSKERIPVISYVSCVVIALPMAARAMSDLLQLGSCPVGLP 106
WS+TLRLSVFP SSKERIPV+SYVSCVVIALP AARA+SDLLQLGSCPVGLP
Sbjct: 32 WSKTLRLSVFPRSSKERIPVMSYVSCVVIALPRAARAISDLLQLGSCPVGLP 83
>Os01g0384450 Hypothetical protein
Length = 83
Score = 91.7 bits (226), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 45/52 (86%), Positives = 47/52 (90%)
Query: 55 WSETLRLSVFPHSSKERIPVISYVSCVVIALPMAARAMSDLLQLGSCPVGLP 106
WS+TLRLSVFP SSKERIPV+SY SCVVIAL ARAMSDLLQLGSCPVGLP
Sbjct: 32 WSKTLRLSVFPRSSKERIPVMSYASCVVIALLRVARAMSDLLQLGSCPVGLP 83
>Os11g0415400 Conserved hypothetical protein
Length = 59
Score = 74.7 bits (182), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 36/40 (90%), Positives = 37/40 (92%)
Query: 67 SSKERIPVISYVSCVVIALPMAARAMSDLLQLGSCPVGLP 106
SSKERIPV+SY SCVVIALP AARAMSDLLQLGSCP GLP
Sbjct: 20 SSKERIPVMSYASCVVIALPRAARAMSDLLQLGSCPFGLP 59
>Os01g0512001 Conserved hypothetical protein
Length = 71
Score = 73.9 bits (180), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 36/40 (90%), Positives = 37/40 (92%)
Query: 67 SSKERIPVISYVSCVVIALPMAARAMSDLLQLGSCPVGLP 106
SSKERIPV+SY SCVVIALP AARAMSDLLQLGSC VGLP
Sbjct: 32 SSKERIPVMSYASCVVIALPRAARAMSDLLQLGSCSVGLP 71
>Os08g0319450 Conserved hypothetical protein
Length = 40
Score = 71.6 bits (174), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 34/39 (87%), Positives = 37/39 (94%)
Query: 68 SKERIPVISYVSCVVIALPMAARAMSDLLQLGSCPVGLP 106
++ERIPV+SY SCVVIALP AARAMSDLLQLGSCPVGLP
Sbjct: 2 ARERIPVMSYASCVVIALPRAARAMSDLLQLGSCPVGLP 40
>Os11g0417266 Hypothetical protein
Length = 103
Score = 70.9 bits (172), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/40 (90%), Positives = 37/40 (92%)
Query: 67 SSKERIPVISYVSCVVIALPMAARAMSDLLQLGSCPVGLP 106
SSKERI V+SYVSCVVIALP AARAMSDLLQLGSC VGLP
Sbjct: 64 SSKERILVMSYVSCVVIALPRAARAMSDLLQLGSCSVGLP 103
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.131 0.382
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,368,963
Number of extensions: 55304
Number of successful extensions: 105
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 103
Number of HSP's successfully gapped: 8
Length of query: 106
Length of database: 17,035,801
Length adjustment: 74
Effective length of query: 32
Effective length of database: 13,171,965
Effective search space: 421502880
Effective search space used: 421502880
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 149 (62.0 bits)