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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0126900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.13 (0.04) R2 : 0.8
β1 : 0.415 (0.182) R2dD : 0.00386 R2D : -0.137
β2 : 2.41 (0.115) R2dC : 0.282 R2C : 0.0541
β3 : -0.935 (0.113) R2dE : 0.0484 R2E : -0.136
β4 : -2.92 (0.396) R2dD*C : 0.0259 R2D*C : -0.126
β5 : 6.87 (0.775) R2dD*E : 0.0615 R2D*E : -0.066
γ1 : -2.4 (0.0955) R2dN8 : 0.495 R2N8 : 0.535
σ : 0.73
deviance : 241.26
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_____
C
peak time of C : 21.3
E
wheather : temperature
threshold : 25.54
memory length : 8
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 16
open length of G : 12.3

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
241.26 0.73 6.13 0.415 2.41 -0.935 -2.92 6.87 -2.4 21.3 25.54 8 16 12.3
281.52 0.787 6.21 -0.595 2.34 -0.792 -2.05 -- -2.72 21.3 25.5 9 16.3 11.7
269.99 0.765 6.15 0.315 2.41 -0.91 -- 5.49 -2.46 21.3 25.52 6 16.5 13.4
296.28 0.802 6.21 -0.515 2.35 -0.813 -- -- -2.72 21.3 25.51 9 16.2 11.4
502.88 1.05 6.18 -0.00127 -- 0.413 -- 4.14 -2.89 -- 25.52 6 16.5 13.4
306.46 0.821 6.25 -0.679 1.88 -- -2.06 -- -2.95 21.7 -- -- -- --
322.56 0.841 6.24 -0.6 1.89 -- -- -- -2.94 21.7 -- -- -- --
311.74 0.822 6.2 -0.568 -- 1.43 -- -- -2.99 -- 5.494 84 13.4 13.6
301.06 0.808 6.2 -- 2.37 -0.833 -- -- -2.7 21.3 25.5 9 16 8.98
534.11 1.08 6.19 -0.584 -- -- -- -- -2.94 -- -- -- -- --
332.06 0.852 6.23 -- 1.89 -- -- -- -2.87 21.6 -- -- -- --
320.03 0.833 6.19 -- -- 1.45 -- -- -2.95 -- 6.489 82 13.4 13.6
543.11 1.09 6.18 -- -- -- -- -- -2.88 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 254.16 temperature 25 10 > th dose independent rect. 16 12
12 258.50 temperature 30 720 > th dose independent rect. 13 1
14 258.99 temperature 20 720 > th dose dependent rect. 1 2
17 260.35 temperature 25 270 < th dose independent rect. 24 12
18 260.93 temperature 25 90 < th dose independent rect. 3 10
20 261.25 temperature 20 720 > th dose dependent rect. 23 8
21 261.51 temperature 30 90 < th dose dependent rect. 3 10
31 262.59 temperature 25 90 > th dose independent rect. 1 14
40 263.68 temperature 25 30 > th dose independent rect. 18 10
42 263.75 temperature 30 270 < th dose dependent rect. 24 12
43 263.86 temperature 25 270 > th dose independent rect. 23 10
67 265.25 temperature 25 10 > th dose dependent rect. 18 11
92 266.51 temperature 25 10 < th dose independent rect. 16 11
99 266.81 temperature 25 10 < th dose independent rect. 14 13
119 267.72 temperature 25 270 > th dose independent rect. 23 15
123 267.78 temperature 20 270 > th dose dependent sin 7 NA
127 268.04 temperature 30 720 < th dose dependent rect. 24 6
180 269.63 temperature 30 30 < th dose dependent rect. 3 14
193 270.08 temperature 20 30 > th dose dependent rect. 1 15
200 270.43 temperature 30 30 < th dose dependent rect. 24 12
205 270.59 temperature 25 270 < th dose independent sin 6 NA
206 270.60 temperature 25 270 > th dose independent sin 6 NA
216 270.96 temperature 25 30 > th dose dependent rect. 20 9
218 271.05 temperature 10 720 > th dose dependent rect. 21 10
219 271.10 temperature 25 30 > th dose independent sin 14 NA
225 271.22 temperature 10 720 > th dose dependent rect. 23 8
236 271.44 temperature 20 270 > th dose dependent rect. 23 14
244 271.66 temperature 25 30 > th dose independent rect. 20 8
257 271.85 temperature 25 10 > th dose dependent rect. 16 13
268 272.07 radiation 40 720 > th dose independent rect. 13 1
275 272.15 temperature 25 90 > th dose dependent rect. 20 5
303 272.65 temperature 25 90 > th dose dependent rect. 16 9
313 272.88 temperature 25 90 > th dose dependent rect. 16 13
314 272.89 temperature 25 270 > th dose dependent rect. 16 7
318 272.97 temperature 25 10 < th dose independent sin 15 NA
343 273.27 temperature 30 90 < th dose dependent sin 5 NA
385 273.75 temperature 25 30 > th dose independent rect. 6 10
436 274.51 wind 9 720 < th dose independent rect. 7 23
449 274.67 atmosphere 1005 30 > th dose dependent rect. 16 7
464 274.90 temperature 10 720 > th dose dependent rect. 6 1
473 275.00 wind 9 720 < th dose independent rect. 24 15
530 275.60 radiation 40 720 < th dose independent rect. 13 1
560 276.07 temperature 20 30 > th dose dependent rect. 23 17
569 276.12 temperature 15 30 > th dose dependent rect. 6 10
573 276.17 wind 5 30 < th dose independent rect. 18 12
587 276.31 temperature 25 720 < th dose dependent rect. 3 2
694 277.36 temperature 25 90 > th dose dependent sin 12 NA
702 277.45 radiation 40 720 < th dose independent rect. 12 6
750 277.81 temperature 25 90 > th dose dependent rect. 2 1
797 278.16 temperature 25 90 > th dose independent rect. 1 2
818 278.31 radiation 40 720 > th dose independent rect. 11 3
828 278.42 atmosphere 1005 30 > th dose dependent rect. 11 12
861 278.70 wind 9 720 < th dose independent rect. 24 23
885 278.78 radiation 40 720 < th dose independent rect. 12 12
893 278.84 temperature 10 30 > th dose dependent rect. 6 12
899 278.89 temperature 25 90 > th dose dependent rect. 1 3
944 279.08 atmosphere 1000 30 > th dose independent rect. 3 23
961 279.24 atmosphere 995 720 > th dose independent rect. 24 15