BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0117200 Os04g0117200|AK107523
         (414 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os04g0117200  Spectrin repeat containing protein                  804   0.0  

>Os04g0117200 Spectrin repeat containing protein
          Length = 414

 Score =  804 bits (2077), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/395 (100%), Positives = 395/395 (100%)

Query: 20  DSGKGAQAEWLRIYDGIVAMLRKTQAQVEELVAERDHLAAFVKIQHDFMVSRVGRLQSSL 79
           DSGKGAQAEWLRIYDGIVAMLRKTQAQVEELVAERDHLAAFVKIQHDFMVSRVGRLQSSL
Sbjct: 20  DSGKGAQAEWLRIYDGIVAMLRKTQAQVEELVAERDHLAAFVKIQHDFMVSRVGRLQSSL 79

Query: 80  QQARKADAIRKRYEAANMEILIGDKEREARSYQKIAELTENDLEDFRTSIAALAAENYEL 139
           QQARKADAIRKRYEAANMEILIGDKEREARSYQKIAELTENDLEDFRTSIAALAAENYEL
Sbjct: 80  QQARKADAIRKRYEAANMEILIGDKEREARSYQKIAELTENDLEDFRTSIAALAAENYEL 139

Query: 140 KEKLKEVERHAELAENTVDHHIHSPRDLRAELKKLKHAYKTLSSEKEKEVSALRAENDFV 199
           KEKLKEVERHAELAENTVDHHIHSPRDLRAELKKLKHAYKTLSSEKEKEVSALRAENDFV
Sbjct: 140 KEKLKEVERHAELAENTVDHHIHSPRDLRAELKKLKHAYKTLSSEKEKEVSALRAENDFV 199

Query: 200 WNQLRTMENDYTDLLKKKKIEAAQATEAAQKLQKNLEELQDQNKGNEIGRLQAEAVDAKM 259
           WNQLRTMENDYTDLLKKKKIEAAQATEAAQKLQKNLEELQDQNKGNEIGRLQAEAVDAKM
Sbjct: 200 WNQLRTMENDYTDLLKKKKIEAAQATEAAQKLQKNLEELQDQNKGNEIGRLQAEAVDAKM 259

Query: 260 NISILEDKLQEMLSLVKEKDLEIEQLKHGQPMTSQINKKDINQKNRKCRSQDPPSRDKST 319
           NISILEDKLQEMLSLVKEKDLEIEQLKHGQPMTSQINKKDINQKNRKCRSQDPPSRDKST
Sbjct: 260 NISILEDKLQEMLSLVKEKDLEIEQLKHGQPMTSQINKKDINQKNRKCRSQDPPSRDKST 319

Query: 320 NLQATPPGRKVKISRQHASSSKQKQVQSRNNSRRQKLEGDKSEVGEKRKRALPSSSGLQR 379
           NLQATPPGRKVKISRQHASSSKQKQVQSRNNSRRQKLEGDKSEVGEKRKRALPSSSGLQR
Sbjct: 320 NLQATPPGRKVKISRQHASSSKQKQVQSRNNSRRQKLEGDKSEVGEKRKRALPSSSGLQR 379

Query: 380 CSARQQAKSSASPVVQPLLFSPIFRVPKVKTPTPP 414
           CSARQQAKSSASPVVQPLLFSPIFRVPKVKTPTPP
Sbjct: 380 CSARQQAKSSASPVVQPLLFSPIFRVPKVKTPTPP 414



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.310    0.125    0.332 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,078,673
Number of extensions: 474239
Number of successful extensions: 2632
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 2632
Number of HSP's successfully gapped: 1
Length of query: 414
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 311
Effective length of database: 11,657,759
Effective search space: 3625563049
Effective search space used: 3625563049
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 157 (65.1 bits)