BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0115900 Os04g0115900|Os04g0115900
         (161 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os04g0115900  Conserved hypothetical protein                      135   1e-32

>Os04g0115900 Conserved hypothetical protein
          Length = 161

 Score =  135 bits (340), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 82/161 (50%), Positives = 82/161 (50%)

Query: 1   MEERFLAEPLKATTVTCIPRLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MEERFLAEPLKATTVTCIPRL                                       
Sbjct: 1   MEERFLAEPLKATTVTCIPRLRGGGGGGARRHRRAASSGGGAAPPVSSSVLDRVRDVVLR 60

Query: 61  XAMLSAASTTTKQGALPPQQQTATPIXXXXXXXXXXXXXXXXXXXXXPAAPAYADSYRSE 120
            AMLSAASTTTKQGALPPQQQTATPI                     PAAPAYADSYRSE
Sbjct: 61  LAMLSAASTTTKQGALPPQQQTATPIRTSPGRSAAATSRRSAAVRMSPAAPAYADSYRSE 120

Query: 121 AVDECIEFLKRXXXXXXXXXXXXXXXXXXMNSPSPLHACAM 161
           AVDECIEFLKR                  MNSPSPLHACAM
Sbjct: 121 AVDECIEFLKRSAAGVGVGGAPASPAVGVMNSPSPLHACAM 161



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.316    0.125    0.364 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,656,137
Number of extensions: 43486
Number of successful extensions: 90
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 88
Number of HSP's successfully gapped: 1
Length of query: 161
Length of database: 17,035,801
Length adjustment: 93
Effective length of query: 68
Effective length of database: 12,179,899
Effective search space: 828233132
Effective search space used: 828233132
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 152 (63.2 bits)