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Os04g0115900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.29 (0.0418) R2 : 0.374
β1 : 1.79 (0.159) R2dD : 0.2 R2D : 0.0478
β2 : 1.05 (0.117) R2dC : 0.143 R2C : -0.0768
β3 : -3.24 (0.227) R2dE : 0.41 R2E : 0.0422
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.311 (0.0939) R2dN8 : 0.0229 R2N8 : -0.0499
σ : 0.771
deviance : 274.32
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C
peak time of C : 15.4
E
wheather : temperature
threshold : 7.86
memory length : 332
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
274.15 0.778 6.27 1.9 1.09 -3.26 -0.0724 0.71 0.338 15.2 12.18 300 -- --
274.33 0.771 6.29 1.78 1.06 -3.24 0.00921 -- 0.307 15.4 7.804 325 -- --
274.08 0.771 6.28 1.89 1.07 -3.26 -- 0.606 0.335 15.3 12.54 316 -- --
274.32 0.771 6.29 1.79 1.05 -3.24 -- -- 0.311 15.4 7.86 332 -- --
290.73 0.794 6.29 1.81 -- -2.63 -- 0.15 0.259 -- 6.462 830 -- --
382.71 0.917 6.38 1.04 0.481 -- 1.08 -- -0.163 10.3 -- -- -- --
386.43 0.921 6.38 1.09 0.485 -- -- -- -0.157 11.3 -- -- -- --
290.75 0.794 6.3 1.78 -- -2.63 -- -- 0.252 -- -1.132 830 -- --
349.85 0.871 6.35 -- 0.829 -2.39 -- -- 0.00729 14.8 11.68 316 -- --
401.16 0.936 6.39 1.07 -- -- -- -- -0.162 -- -- -- -- --
417.58 0.956 6.4 -- 0.474 -- -- -- -0.278 11.2 -- -- -- --
362.77 0.887 6.36 -- -- -1.62 -- -- -0.0316 -- 19.17 770 -- --
431.64 0.97 6.42 -- -- -- -- -- -0.281 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 262.25 wind 9 43200 > th dose dependent rect. 18 12
4 268.55 wind 9 43200 > th dose independent rect. 18 12
9 269.83 wind 9 43200 > th dose dependent rect. 18 6
14 271.36 wind 9 43200 > th dose independent rect. 18 6
15 271.41 temperature 20 720 > th dose dependent sin 10 NA
19 272.10 wind 9 43200 < th dose independent rect. 18 13
21 272.20 wind 9 43200 > th dose independent rect. 18 9
23 272.28 temperature 20 720 > th dose dependent rect. 19 16
25 272.35 wind 7 43200 > th dose independent rect. 20 1
26 272.44 temperature 10 720 > th dose dependent rect. 17 16
27 272.45 temperature 15 720 > th dose dependent rect. 17 18
29 272.58 wind 9 43200 > th dose dependent rect. 18 4
39 272.99 temperature 30 720 < th dose dependent rect. 17 18
40 273.04 temperature 15 270 > th dose dependent rect. 15 23
47 273.57 wind 9 43200 < th dose independent rect. 18 7
48 273.69 temperature 15 270 > th dose dependent rect. 1 23
54 273.88 temperature 10 720 > th dose dependent rect. 19 16
64 274.16 temperature 10 720 > th dose dependent rect. 12 23
66 274.24 wind 7 43200 > th dose dependent rect. 20 1
69 274.30 temperature 15 270 > th dose dependent rect. 4 23
71 274.33 temperature 15 720 > th dose dependent rect. 15 20
74 274.54 temperature 15 10 > th dose dependent rect. 23 23
75 274.64 temperature 10 270 > th dose dependent no NA NA
89 275.31 wind 7 43200 < th dose independent rect. 20 1
91 275.46 wind 9 43200 < th dose independent rect. 18 3
92 275.54 wind 9 43200 > th dose independent rect. 18 4
101 275.78 temperature 10 720 > th dose dependent rect. 10 23
117 276.34 temperature 30 720 < th dose dependent sin 10 NA
170 278.10 temperature 10 720 > th dose dependent rect. 8 23
175 278.20 temperature 10 720 > th dose dependent rect. 6 23
176 278.23 temperature 15 270 > th dose dependent rect. 23 23
182 278.36 temperature 15 720 > th dose dependent rect. 19 23
226 279.51 temperature 15 720 > th dose dependent rect. 21 23
256 280.13 temperature 15 720 > th dose dependent rect. 19 21
304 280.92 temperature 15 720 > th dose dependent rect. 21 21
342 281.57 temperature 30 270 < th dose dependent rect. 21 23
352 281.72 temperature 20 1440 > th dose dependent rect. 17 11
378 281.95 temperature 30 30 < th dose dependent rect. 9 23
461 282.91 temperature 10 10 > th dose dependent no NA NA
489 283.26 temperature 30 270 < th dose dependent rect. 24 23
495 283.31 temperature 30 1440 < th dose dependent rect. 17 2
587 284.20 temperature 30 1440 < th dose dependent rect. 17 9
607 284.39 temperature 30 10 < th dose dependent rect. 7 23
618 284.51 temperature 20 1440 > th dose dependent rect. 24 9
621 284.53 temperature 20 1440 > th dose dependent rect. 17 5
635 284.61 temperature 20 1440 > th dose dependent rect. 18 1
641 284.69 temperature 30 270 < th dose dependent rect. 12 23
643 284.75 temperature 30 270 < th dose dependent no NA NA
652 284.81 temperature 30 1440 < th dose dependent rect. 17 5
660 284.87 wind 9 43200 > th dose dependent sin 13 NA
748 285.39 temperature 30 270 < th dose dependent rect. 7 23
754 285.47 temperature 20 1440 > th dose dependent rect. 24 2
792 285.70 temperature 30 4320 < th dose dependent rect. 19 3
800 285.74 temperature 30 4320 < th dose dependent rect. 21 1
803 285.75 temperature 10 4320 > th dose dependent rect. 17 5
817 285.82 temperature 10 4320 > th dose dependent rect. 21 1
818 285.82 temperature 10 4320 > th dose dependent rect. 19 3
990 286.60 temperature 25 4320 < th dose independent rect. 13 19