BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0112300 Os04g0112300|AK073153
(475 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0112300 Eukaryotic initiation factor 3, gamma subunit ... 899 0.0
>Os04g0112300 Eukaryotic initiation factor 3, gamma subunit family protein
Length = 475
Score = 899 bits (2323), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 442/475 (93%), Positives = 442/475 (93%)
Query: 1 MAAIPREAWEGCSVLLDINDGDRLAFFRLTPAATVKVGNRTCSLQPLVGRPFGSLFSVGP 60
MAAIPREAWEGCSVLLDINDGDRLAFFRLTPAATVKVGNRTCSLQPLVGRPFGSLFSVGP
Sbjct: 1 MAAIPREAWEGCSVLLDINDGDRLAFFRLTPAATVKVGNRTCSLQPLVGRPFGSLFSVGP 60
Query: 61 SGLVPCADAPSSRDDTTQDAADGPSQDETRDNRSLVDNNTAQNLSSDDIEAMKRDGVSGD 120
SGLVPCADAPSSRDDTTQDAADGPSQDETRDNRSLVDNNTAQNLSSDDIEAMKRDGVSGD
Sbjct: 61 SGLVPCADAPSSRDDTTQDAADGPSQDETRDNRSLVDNNTAQNLSSDDIEAMKRDGVSGD 120
Query: 121 EIVEALIANSSTFGKKTLFSQEXXXXXXXXXXXXXXXXRRPSTRSICETYFKKSPARTGF 180
EIVEALIANSSTFGKKTLFSQE RRPSTRSICETYFKKSPARTGF
Sbjct: 121 EIVEALIANSSTFGKKTLFSQEKYKLKKQKKYAPKVLLRRPSTRSICETYFKKSPARTGF 180
Query: 181 MRVDALSLLLSMANVGPYSXXXXXXXXXXXXXXXXXERLGGTGYVCSTYLGSAASSIDII 240
MRVDALSLLLSMANVGPYS ERLGGTGYVCSTYLGSAASSIDII
Sbjct: 181 MRVDALSLLLSMANVGPYSDVLVVDMVGGLVVGAVAERLGGTGYVCSTYLGSAASSIDII 240
Query: 241 RMYNLSSDMTTRIVQAPLSDLCSLQNSVDVSSGLNDSIQGEAQEPTAVPVENTQPSVPQP 300
RMYNLSSDMTTRIVQAPLSDLCSLQNSVDVSSGLNDSIQGEAQEPTAVPVENTQPSVPQP
Sbjct: 241 RMYNLSSDMTTRIVQAPLSDLCSLQNSVDVSSGLNDSIQGEAQEPTAVPVENTQPSVPQP 300
Query: 301 TDTAVPDEKTQSPKEQSIDIDIPEPLLDEHINQDGNSSLDSKGDEDGSSIGPKSLKAGKA 360
TDTAVPDEKTQSPKEQSIDIDIPEPLLDEHINQDGNSSLDSKGDEDGSSIGPKSLKAGKA
Sbjct: 301 TDTAVPDEKTQSPKEQSIDIDIPEPLLDEHINQDGNSSLDSKGDEDGSSIGPKSLKAGKA 360
Query: 361 PSPERMKYWSEHGFSSLIVAAPGHDVESFVADLLPLLSYSAPFAIYHQYLQPLATCMHSL 420
PSPERMKYWSEHGFSSLIVAAPGHDVESFVADLLPLLSYSAPFAIYHQYLQPLATCMHSL
Sbjct: 361 PSPERMKYWSEHGFSSLIVAAPGHDVESFVADLLPLLSYSAPFAIYHQYLQPLATCMHSL 420
Query: 421 QVSKMALGLQISEPWLREYQVLPSRTHPHMQMNAFGGYILSGIRIHNGDACNGSK 475
QVSKMALGLQISEPWLREYQVLPSRTHPHMQMNAFGGYILSGIRIHNGDACNGSK
Sbjct: 421 QVSKMALGLQISEPWLREYQVLPSRTHPHMQMNAFGGYILSGIRIHNGDACNGSK 475
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.313 0.130 0.379
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 16,364,468
Number of extensions: 720174
Number of successful extensions: 1853
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1849
Number of HSP's successfully gapped: 1
Length of query: 475
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 370
Effective length of database: 11,553,331
Effective search space: 4274732470
Effective search space used: 4274732470
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 158 (65.5 bits)