Os04g0112300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Eukaryotic initiation factor 3, gamma subunit family protein.
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Os04g0112300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Eukaryotic initiation factor 3, gamma subunit family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 53.87 | 0.345 | 9.06 | 0.16 | 0.639 | -0.358 | -0.199 | -0.617 | -0.419 | 14.7 | 24.56 | 178 | -- | -- |
| 55.11 | 0.346 | 9.06 | -0.0285 | 0.646 | -0.37 | 0.03 | -- | -0.47 | 14.7 | 24.5 | 183 | -- | -- |
| 53.98 | 0.342 | 9.06 | 0.133 | 0.642 | -0.357 | -- | -0.543 | -0.425 | 14.7 | 24.53 | 183 | -- | -- |
| 55.08 | 0.346 | 9.07 | -0.0279 | 0.64 | -0.383 | -- | -- | -0.478 | 14.7 | 24.57 | 178 | -- | -- |
| 68.4 | 0.385 | 9.08 | -0.0732 | -- | -0.639 | -- | -0.182 | -0.515 | -- | 25.8 | 107 | -- | -- |
| 63.36 | 0.373 | 9.03 | 0.0793 | 0.852 | -- | 0.243 | -- | -0.278 | 15.1 | -- | -- | -- | -- |
| 63.55 | 0.373 | 9.03 | 0.0843 | 0.853 | -- | -- | -- | -0.276 | 15.1 | -- | -- | -- | -- |
| 68.51 | 0.385 | 9.09 | -0.121 | -- | -0.651 | -- | -- | -0.531 | -- | 25.72 | 107 | -- | -- |
| 55.1 | 0.346 | 9.07 | -- | 0.628 | -0.384 | -- | -- | -0.478 | 14.7 | 24.6 | 177 | -- | -- |
| 105.05 | 0.479 | 9.03 | 0.048 | -- | -- | -- | -- | -0.299 | -- | -- | -- | -- | -- |
| 63.74 | 0.373 | 9.03 | -- | 0.851 | -- | -- | -- | -0.286 | 15.1 | -- | -- | -- | -- |
| 68.88 | 0.387 | 9.08 | -- | -- | -0.642 | -- | -- | -0.515 | -- | 25.75 | 107 | -- | -- |
| 105.11 | 0.479 | 9.03 | -- | -- | -- | -- | -- | -0.304 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 47.08 | temperature | 10 | 90 | > th | dose dependent | rect. | 7 | 20 |
| 3 | 47.70 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 16 |
| 6 | 47.91 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 14 |
| 9 | 47.97 | temperature | 15 | 10 | > th | dose dependent | rect. | 7 | 20 |
| 25 | 48.54 | temperature | 15 | 270 | > th | dose dependent | rect. | 19 | 16 |
| 72 | 49.27 | temperature | 30 | 90 | < th | dose dependent | sin | 5 | NA |
| 106 | 49.68 | temperature | 25 | 270 | < th | dose independent | rect. | 24 | 18 |
| 151 | 50.10 | temperature | 10 | 90 | > th | dose dependent | sin | 5 | NA |
| 162 | 50.17 | temperature | 10 | 10 | > th | dose dependent | sin | 4 | NA |
| 203 | 50.47 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 5 |
| 209 | 50.49 | temperature | 15 | 270 | > th | dose dependent | rect. | 6 | 5 |
| 217 | 50.57 | temperature | 10 | 270 | > th | dose dependent | rect. | 5 | 8 |
| 231 | 50.63 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 20 |
| 254 | 50.75 | temperature | 25 | 90 | < th | dose independent | rect. | 3 | 16 |
| 279 | 50.87 | temperature | 25 | 270 | < th | dose independent | sin | 7 | NA |
| 297 | 50.94 | temperature | 25 | 90 | < th | dose independent | rect. | 3 | 18 |
| 358 | 51.27 | temperature | 30 | 90 | < th | dose dependent | rect. | 1 | 10 |
| 362 | 51.28 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 8 |
| 407 | 51.47 | temperature | 20 | 270 | > th | dose independent | rect. | 5 | 21 |
| 433 | 51.55 | temperature | 15 | 10 | > th | dose dependent | rect. | 7 | 9 |
| 459 | 51.65 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 6 |
| 462 | 51.66 | wind | 9 | 270 | < th | dose dependent | rect. | 6 | 7 |
| 472 | 51.70 | temperature | 25 | 270 | < th | dose independent | rect. | 1 | 8 |
| 478 | 51.71 | wind | 7 | 270 | < th | dose independent | rect. | 6 | 19 |
| 493 | 51.74 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 18 |
| 554 | 51.90 | temperature | 25 | 270 | > th | dose independent | rect. | 18 | 17 |
| 583 | 51.98 | temperature | 25 | 270 | > th | dose independent | rect. | 17 | 20 |
| 591 | 52.01 | temperature | 25 | 270 | > th | dose independent | sin | 7 | NA |
| 600 | 52.03 | wind | 7 | 270 | < th | dose independent | rect. | 5 | 21 |
| 655 | 52.17 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 15 |
| 699 | 52.28 | wind | 5 | 270 | < th | dose independent | rect. | 6 | 7 |
| 712 | 52.31 | radiation | 10 | 270 | < th | dose dependent | rect. | 1 | 13 |
| 738 | 52.40 | radiation | 10 | 270 | < th | dose dependent | sin | 6 | NA |
| 754 | 52.44 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 16 |
| 780 | 52.51 | temperature | 10 | 270 | > th | dose dependent | rect. | 17 | 9 |
| 791 | 52.54 | temperature | 25 | 270 | < th | dose independent | rect. | 2 | 3 |
| 798 | 52.56 | wind | 1 | 270 | > th | dose independent | rect. | 1 | 5 |
| 820 | 52.60 | temperature | 25 | 90 | < th | dose independent | rect. | 3 | 8 |
| 844 | 52.65 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 5 |
| 853 | 52.66 | wind | 9 | 270 | < th | dose dependent | rect. | 6 | 19 |
| 872 | 52.70 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 13 |
| 893 | 52.74 | radiation | 10 | 270 | > th | dose independent | sin | 8 | NA |
| 994 | 52.95 | radiation | 10 | 270 | < th | dose independent | rect. | 1 | 13 |