BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0112100 Os04g0112100|J090098F18
         (339 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os04g0112100  Disease resistance protein family protein           526   e-150

>Os04g0112100 Disease resistance protein family protein
          Length = 339

 Score =  526 bits (1355), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 276/339 (81%), Positives = 276/339 (81%)

Query: 1   MPIGAISTVGPAISPGIKIAEIAESFVAXXXXXXXXXXXXVAQLVGEVGKIAVAVDTVEE 60
           MPIGAISTVGPAISPGIKIAEIAESFVA            VAQLVGEVGKIAVAVDTVEE
Sbjct: 1   MPIGAISTVGPAISPGIKIAEIAESFVARKYRRLRDYRKDVAQLVGEVGKIAVAVDTVEE 60

Query: 61  QEQFMSDRRIVGQLSELMDAIHEAEDILDAVDYRDSIWARKHKVRQVIHSIVEQAKRIVG 120
           QEQFMSDRRIVGQLSELMDAIHEAEDILDAVDYRDSIWARKHKVRQVIHSIVEQAKRIVG
Sbjct: 61  QEQFMSDRRIVGQLSELMDAIHEAEDILDAVDYRDSIWARKHKVRQVIHSIVEQAKRIVG 120

Query: 121 IDGALNRLDKSMNDLPRMQQNQRDLVQLSNFXXXXXXXXXXXXXXXXXXXTGLLPDGKLY 180
           IDGALNRLDKSMNDLPRMQQNQRDLVQLSNF                   TGLLPDGKLY
Sbjct: 121 IDGALNRLDKSMNDLPRMQQNQRDLVQLSNFRSSQGGGDGGASASRPRSATGLLPDGKLY 180

Query: 181 GYKEEYDRLVSALLYDPPRRPXXXXXXXXXXXXXXXXXXXXKTALAQHALRHVDVQARFD 240
           GYKEEYDRLVSALLYDPPRRP                    KTALAQHALRHVDVQARFD
Sbjct: 181 GYKEEYDRLVSALLYDPPRRPGGNGNGGGQVVAVVGDGGVGKTALAQHALRHVDVQARFD 240

Query: 241 HVIWASVPHKYRNKDLLAEIWMSGPGATATAATHRCADQMSFGALQAEFVRLVSLSSQRY 300
           HVIWASVPHKYRNKDLLAEIWMSGPGATATAATHRCADQMSFGALQAEFVRLVSLSSQRY
Sbjct: 241 HVIWASVPHKYRNKDLLAEIWMSGPGATATAATHRCADQMSFGALQAEFVRLVSLSSQRY 300

Query: 301 LLVLXXXXXXXXXXXXHQRSRKEWEDVLAPFKQGERGNT 339
           LLVL            HQRSRKEWEDVLAPFKQGERGNT
Sbjct: 301 LLVLDDVCNDESDDDDHQRSRKEWEDVLAPFKQGERGNT 339



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.320    0.134    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,910,391
Number of extensions: 268343
Number of successful extensions: 841
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 841
Number of HSP's successfully gapped: 1
Length of query: 339
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 237
Effective length of database: 11,709,973
Effective search space: 2775263601
Effective search space used: 2775263601
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 156 (64.7 bits)