Os04g0112100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Disease resistance protein family protein.
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Os04g0112100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Disease resistance protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 190.1 | 0.648 | 5 | -0.34 | 1.41 | 1.45 | 0.291 | -5.91 | -0.551 | 7.28 | 25.1 | 4609 | -- | -- |
| 204.49 | 0.666 | 4.86 | 0.401 | 1.38 | 1.51 | 0.413 | -- | -0.516 | 7.42 | 21.2 | 9814 | -- | -- |
| 186.7 | 0.636 | 4.99 | -0.499 | 1.46 | 1.55 | -- | -6.87 | -0.468 | 7.08 | 26.7 | 4616 | -- | -- |
| 203.97 | 0.665 | 4.86 | 0.61 | 1.39 | 1.42 | -- | -- | -0.455 | 7.28 | 21.3 | 9828 | -- | -- |
| 292.34 | 0.796 | 5.02 | -0.391 | -- | 1.56 | -- | -6.59 | -0.436 | -- | 26.8 | 4392 | -- | -- |
| 244.8 | 0.734 | 4.74 | 1.67 | 1.39 | -- | 0.265 | -- | 0.0767 | 7.14 | -- | -- | -- | -- |
| 244.99 | 0.733 | 4.74 | 1.67 | 1.4 | -- | -- | -- | 0.0761 | 7.14 | -- | -- | -- | -- |
| 304.64 | 0.813 | 4.87 | 0.568 | -- | 1.5 | -- | -- | -0.401 | -- | 21.39 | 5776 | -- | -- |
| 198.95 | 0.657 | 4.86 | -- | 1.41 | 1.82 | -- | -- | -0.491 | 7.24 | 19 | 23230 | -- | -- |
| 347.78 | 0.871 | 4.77 | 1.7 | -- | -- | -- | -- | 0.101 | -- | -- | -- | -- | -- |
| 318.73 | 0.835 | 4.78 | -- | 1.41 | -- | -- | -- | -0.11 | 7.06 | -- | -- | -- | -- |
| 301.43 | 0.809 | 4.91 | -- | -- | 1.82 | -- | -- | -0.481 | -- | 19 | 23118 | -- | -- |
| 423.92 | 0.961 | 4.81 | -- | -- | -- | -- | -- | -0.0877 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 184.31 | radiation | 1 | 14400 | < th | dose dependent | rect. | 3 | 2 |
| 3 | 184.68 | radiation | 1 | 43200 | < th | dose dependent | rect. | 24 | 5 |
| 5 | 184.75 | radiation | 1 | 43200 | < th | dose dependent | rect. | 21 | 8 |
| 8 | 184.82 | radiation | 1 | 43200 | < th | dose dependent | rect. | 19 | 10 |
| 15 | 185.74 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 25 | 185.99 | temperature | 25 | 4320 | > th | dose independent | rect. | 10 | 2 |
| 26 | 186.31 | radiation | 30 | 43200 | < th | dose dependent | rect. | 7 | 2 |
| 27 | 186.36 | radiation | 10 | 43200 | < th | dose independent | rect. | 6 | 6 |
| 32 | 186.43 | radiation | 10 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 34 | 186.47 | radiation | 10 | 43200 | < th | dose independent | rect. | 7 | 3 |
| 43 | 186.50 | radiation | 20 | 43200 | < th | dose dependent | rect. | 20 | 13 |
| 48 | 186.56 | radiation | 1 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 77 | 186.66 | radiation | 10 | 43200 | < th | dose independent | rect. | 20 | 19 |
| 102 | 186.74 | radiation | 10 | 43200 | < th | dose independent | sin | 4 | NA |
| 120 | 186.76 | radiation | 20 | 43200 | < th | dose independent | sin | 6 | NA |
| 159 | 186.84 | temperature | 20 | 4320 | > th | dose dependent | rect. | 3 | 1 |
| 172 | 186.88 | radiation | 20 | 43200 | < th | dose independent | rect. | 17 | 19 |
| 262 | 187.02 | radiation | 20 | 43200 | < th | dose independent | rect. | 15 | 23 |
| 295 | 187.05 | radiation | 20 | 43200 | < th | dose independent | rect. | 10 | 23 |
| 300 | 187.06 | temperature | 25 | 4320 | < th | dose independent | rect. | 10 | 2 |
| 344 | 187.08 | radiation | 20 | 43200 | < th | dose independent | no | NA | NA |
| 422 | 187.14 | radiation | 20 | 43200 | < th | dose independent | rect. | 8 | 23 |
| 439 | 187.15 | radiation | 40 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 507 | 187.24 | radiation | 30 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 511 | 187.25 | radiation | 1 | 43200 | > th | dose dependent | sin | 9 | NA |
| 512 | 187.25 | radiation | 30 | 43200 | < th | dose dependent | sin | 9 | NA |
| 513 | 187.25 | radiation | 40 | 43200 | > th | dose dependent | rect. | 11 | 3 |
| 533 | 187.28 | radiation | 30 | 43200 | < th | dose independent | rect. | 11 | 2 |
| 538 | 187.29 | radiation | 20 | 43200 | < th | dose independent | rect. | 11 | 5 |
| 547 | 187.33 | radiation | 30 | 43200 | < th | dose dependent | rect. | 24 | 5 |
| 660 | 187.44 | radiation | 40 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 661 | 187.45 | radiation | 40 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 858 | 187.62 | radiation | 40 | 43200 | < th | dose dependent | rect. | 3 | 2 |