BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0111500 Os04g0111500|AK102051
         (398 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os04g0111500  Exo70 exocyst complex subunit family protein        786   0.0  
Os01g0921900                                                       75   1e-13

>Os04g0111500 Exo70 exocyst complex subunit family protein
          Length = 398

 Score =  786 bits (2031), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/398 (95%), Positives = 381/398 (95%)

Query: 1   MQVFYPQFLTSSIFPIYSLFYEYDTPWILGKNTKTSMDFSKCEDLGKDYLIMLKISTKVL 60
           MQVFYPQFLTSSIFPIYSLFYEYDTPWILGKNTKTSMDFSKCEDLGKDYLIMLKISTKVL
Sbjct: 1   MQVFYPQFLTSSIFPIYSLFYEYDTPWILGKNTKTSMDFSKCEDLGKDYLIMLKISTKVL 60

Query: 61  QSMFCQFCGQNQPFFQTKKDYFQQFAKSPIKKMLEIALSFSESNWSEEHIRPMLLAYDTL 120
           QSMFCQFCGQNQPFFQTKKDYFQQFAKSPIKKMLEIALSFSESNWSEEHIRPMLLAYDTL
Sbjct: 61  QSMFCQFCGQNQPFFQTKKDYFQQFAKSPIKKMLEIALSFSESNWSEEHIRPMLLAYDTL 120

Query: 121 QDVLPTIRELSPDEPDEFFTSILHNMRNASRGIIDNMKRFIQHKVQTWDNIAIHPTTCFL 180
           QDVLPTIRELSPDEPDEFFTSILHNMRNASRGIIDNMKRFIQHKVQTWDNIAIHPTTCFL
Sbjct: 121 QDVLPTIRELSPDEPDEFFTSILHNMRNASRGIIDNMKRFIQHKVQTWDNIAIHPTTCFL 180

Query: 181 INAIKIFNVHKNLLHSTLVPGDGQDSFGYLINGVIACWKLKIKELSMLDDPDKNDSDGXX 240
           INAIKIFNVHKNLLHSTLVPGDGQDSFGYLINGVIACWKLKIKELSMLDDPDKNDSDG  
Sbjct: 181 INAIKIFNVHKNLLHSTLVPGDGQDSFGYLINGVIACWKLKIKELSMLDDPDKNDSDGNN 240

Query: 241 XXXXXXXXXXXXXXXRDTNGLLDGLLVHRELIEECKNEFQSDMENYTSRYMTASWGPAIS 300
                          RDTNGLLDGLLVHRELIEECKNEFQSDMENYTSRYMTASWGPAIS
Sbjct: 241 PNLFIFLLNNIKHFNRDTNGLLDGLLVHRELIEECKNEFQSDMENYTSRYMTASWGPAIS 300

Query: 301 CLNNHTGGSIRQSMNAFISKFEGTFDCQKVLKVPDSELKQKLRDDIENLIFPAYEISFEE 360
           CLNNHTGGSIRQSMNAFISKFEGTFDCQKVLKVPDSELKQKLRDDIENLIFPAYEISFEE
Sbjct: 301 CLNNHTGGSIRQSMNAFISKFEGTFDCQKVLKVPDSELKQKLRDDIENLIFPAYEISFEE 360

Query: 361 LQRNSNSGLFCSCFPRNLTCSMYTPEILRRSVQGLFEG 398
           LQRNSNSGLFCSCFPRNLTCSMYTPEILRRSVQGLFEG
Sbjct: 361 LQRNSNSGLFCSCFPRNLTCSMYTPEILRRSVQGLFEG 398



>Os01g0921900 
          Length = 571

 Score = 74.7 bits (182), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 84/322 (26%), Positives = 134/322 (41%), Gaps = 62/322 (19%)

Query: 108 EHIRPMLLAYDTLQDVLPTIRELSPD-------EPDEF----FTSILHNMRNASRGIIDN 156
           + I  + L+ D L  VL  ++ L+PD        P+EF    +   L  +R A   ++  
Sbjct: 278 DEITKLQLSPDKLFVVLRLLKVLNPDFFLVSQCRPEEFSVAKYDDTLQKLRMAVYHMLRE 337

Query: 157 MKRFIQHKV--QTWDNIAIHPTTCFLINAIKIFNVHKNLLHSTLVPGDGQ------DSFG 208
           +K  IQ +   +      IH  T +++N I++   HK  L   L   D        DS  
Sbjct: 338 LKILIQTRASRRVPPGGGIHEVTRYVMNYIRLLLHHKTTLGLILGNDDRNKDNERMDSLD 397

Query: 209 YLINGVIACWKLKIKELSMLDD-PDKNDSDGXXXXXXXXXXXXXXXXXRDTNGLLDGLL- 266
           +++  +I C +      SML+  P+  +S G                   +   L  LL 
Sbjct: 398 HIVQDLIICLE------SMLNKAPEAYESQGLQCFFLMNNLHFVVKQVEGSE--LISLLG 449

Query: 267 -----VHRELIEECKNEFQSDMENYTSRYMTASWGPAISCLNNHT---GGSIRQ--SMNA 316
                VHRE IE+           Y   Y+  SWGPAISCL+  T   GG   Q  S   
Sbjct: 450 QSWVQVHREFIEQ-----------YLKTYVDLSWGPAISCLSARTGMLGGCFSQPSSTVR 498

Query: 317 FISKFEGTFDCQKVLKVPDSELKQKLRDDIENLIFPAYEISFEELQRNSNSGLFCSCFPR 376
           F  +F+ T+  Q+  KV D +L++K+R  + + +  AY+   ++  +      +      
Sbjct: 499 FSLQFDSTYYNQECWKVEDPQLREKVRRAVCDKVILAYQAHLDKYMKAKRKHEW------ 552

Query: 377 NLTCSMYTPEILRRSVQGLFEG 398
                 YTPE+L+  +  LFEG
Sbjct: 553 ------YTPELLKAQLMKLFEG 568



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.322    0.137    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,701,992
Number of extensions: 499315
Number of successful extensions: 1073
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1075
Number of HSP's successfully gapped: 2
Length of query: 398
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 295
Effective length of database: 11,657,759
Effective search space: 3439038905
Effective search space used: 3439038905
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 157 (65.1 bits)